Transcriptomic analysis of EP.1 and LP.1 parasites. by Laura Piel (12251419)

“…(C) Histogram plot representing the number of genes showing decreased transcript abundance in LP.1 log for the indicated gene categories (see Sheet j in <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1010375#ppat.1010375.s012" target="_blank">S2 Table</a>). …”

Fig 12 - by Yang-Jung Choi (9258427)

“…<p><b>FESEM micrographs of the top and FESEM micrographs to examine the tubule-occluding effects in the hypersensitive tooth model after 1 min exposure to 6 wt.% citric acid (A, x2,000; B, x6,000; C, x10,000; D, sagittal).…”

F9 versus F9. by Tomita Vasilica Stirbat (279113)

“…The staining is for -catenin, scale bars, 10 . (C) Schematic representation of the cortical contractions at the cell-extracellular medium interface (), at the cell-cell interface () and of the adhesion energy J. and increase the tissue surface tension, whereas decreases it (see Eq. 2). …”

Boxplot graph of the depths of the lesions. by Wolfgang H. Arnold (294270)

Co-immunoprecipitation of TDP-43 and TIA-1. by Liqun Liu-Yesucevitz (240136)

“…<p>HEK 293 cells were transfected with TDP-43 (WT, K82/84A or A315T) and TIA-1. The K82/84A TDP-43 construct has had the nuclear localization signal removed (this construct is used again in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013250#pone-0013250-g007" target="_blank">figure 7B</a>), and the A315T TDP-43 construct contains a mutation associated with familial ALS (this construct is used again in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013250#pone-0013250-g008" target="_blank">figure 8</a>). …”

Spectral density functions of the predicted fluctuations in time of pheromone concentration. by Lubomir Kostal (44869)

“…<p>Several spectral density functions were calculated from the predicted optimal pheromone stimulations (such as shown in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000053#pcbi-1000053-g004" target="_blank">Figure 4</a>, bottom panels), for different initial random seeds. …”

Model response to inhibition of PLC and corresponding experimental data. by Jung Min Han (195593)

“…<p><b>A</b>: Response of the HSY cell model, <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1005275#pcbi.1005275.e025" target="_blank">system (6)</a> with <i>ε</i> = 1, to the inhibition of positive Ca²⁺ feedback on IP₃, as well as SERCA pumps. …”

Subcellular localization of Id2. by David C. Butler (261919)

“…<p>(A) Nuclear Id2 expression is decreased in myoblasts overexpressing S5A:GFP. …”

Varying cell-cell adhesion in the original model, calibrated by the monolayer cell motilities, fails to match some experimental trends. by Jinghao Chen (5145005)

“…<p><b>(A)</b> Cumming plots showing simulation results in which we use our calibrated model using cell motilities from monolayer experiments (denoted as CM, see Section 8 in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011855#pcbi.1011855.s001" target="_blank">S1 Text</a>) to predict how PIEZO1 affects wound closure (<i>left</i>) and wound edge length (<i>right</i>) in simulated Control_GoF monolayers (<i>blue</i>), <i>Piezo1</i>-GoF monolayers without altered the cell-cell adhesion parameter (<i>orange</i>), <i>Piezo1</i>-GoF monolayers with increased cell-cell adhesion (<i>green</i>) and decreased cell-cell adhesion (<i>red</i>). …”

Varying the diffusion coefficient in response to changes in cell-cell adhesion fails to match all the experimental trends. by Jinghao Chen (5145005)

“…<p><b>(A)</b> Cumming plots showing simulation results in which we use the phenomenological continuum model (denoted as PCM, see Section 7 in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011855#pcbi.1011855.s001" target="_blank">S1 Text</a>) to predict how PIEZO1 affects wound closure (<i>left</i>) and wound edge length (<i>right</i>) in simulated Control_GoF monolayers (<i>blue</i>), <i>Piezo1</i>-GoF monolayers without altered the diffusion coefficient (<i>orange</i>), <i>Piezo1</i>-GoF monolayers with increased diffusion coefficient (<i>green</i>) and decreased diffusion coefficient (<i>red</i>). …”

Dynamic activation of RhoGTPases at the ectoderm-mesoderm boundary. by Nazanin Rohani (228955)

“…Selected frames from <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000597#pbio.1000597.s017" target="_blank">Movies S9</a> and <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000597#pbio.1000597.s018" target="_blank">S10</a>. …”

<i>Atg</i> genes function in regulating C-IV dendritic development and terminal branching. by Sarah G. Clark (5931911)

“…For detailed genotypes see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0206743#pone.0206743.s001" target="_blank">S1 Table</a>. …”

Molecular mechanisms of HIV-1 resistance development against AZT by ATP-mediated excision. by Max von Kleist (152808)

“…We calculated residual DNA-dependent polymerization of a Poly-T sequence in unstimulated T-cells using eq. (19) with parameters from <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002359#pcbi-1002359-t001" target="_blank">Tables 1</a>, <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002359#pcbi.1002359.s001" target="_blank">S1</a> and <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002359#pcbi.1002359.s003" target="_blank">S3</a> (supplementary material). …”

Six Novel Susceptibility Loci for Early-Onset Androgenetic Alopecia and Their Unexpected Association with Common Diseases by Rui Li (4631)

“…While replicating the two AGA loci on the X chromosome and chromosome 20, six novel susceptibility loci reached genome-wide significance (p = 2.62×10⁻⁹–1.01×10⁻¹²). Unexpectedly, we identified a risk allele at 17q21.31 that was recently associated with Parkinson's disease (PD) at a genome-wide significant level. …”

Extended model of Hippo signaling. by Maryam Jahanshahi (474646)

“…Inactivation of Yki restricts cell growth (for example, due to decreased <i>bantam</i> (<i>ban</i>) transcription [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1006198#pgen.1006198.ref070" target="_blank">70</a>] and <i>myc</i> transcription [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1006198#pgen.1006198.ref071" target="_blank">71–72</a>], not pictured) and impairs S-phase entry by decreasing cyclin E transcription [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1006198#pgen.1006198.ref026" target="_blank">26</a>]. …”

Simulations of electrical activity patterns with two components. by Jos H. T. Rohling (266167)

“…(B) The number of neurons in the shifted component is decreased, resulting in a unimodal multiunit pattern. …”

Speed/Accuracy Trade Off in Selective Attention. by Nayantara Santhi (81942)

“…The error bars represent the standard error of the mean. As in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0001233#pone-0001233-g001" target="_blank">figure 1</a> the x-axis represents the work shift. …”

Identifying cyst initiation candidate genes through mRNA sequencing <i>Pkd2</i> mouse kidneys at pre-cystic and early cystic time points. by Abigail O. Smith (11883787)

“…P6 DEG expression (Log2FC) represented along x-axis vs. P10 and published datasets on y-axis (Log2FC). Datasets include ZS (<i>Pkd2</i>) [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1011510#pgen.1011510.ref017" target="_blank">17</a>] and KP2/3/6 (<i>Pkd1</i>; 2 weeks, 3 weeks and 6 weeks post-induction respectively) [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1011510#pgen.1011510.ref016" target="_blank">16</a>]. …”

Simulation of the scenario of T cell population dynamics following acute infection. by Anet J. N. Anelone (3353708)

“…Right: the time evolution of the antigen-dependent activation function <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0166163#pone.0166163.e032" target="_blank">Eq (14)</a>. …”

The depletion of DDRGK1 inhibits cell migration and invasion in U2OS cells. by Peng Xi (318269)

“…Medium containing 1% FBS in the lower chamber served as a control. (B) The depletion of DDRGK1 decreases the expression of MMP9. …”