Relative expression of the Crx and Nrl transcription factors in S334ter-4 Rho retinas. by Vishal M. Shinde (178347)

“…The qRT-PCR analysis of S334ter-4 Rho retinas revealed that the expression of the Nrl and Crx transcription factors decreased in a time-dependent manner in P10-P21 retinas. …”

Link prediction in 25%, 50% and 75% of the links in networks constructed from all the words in tweets of the , , and datasets. by Sanda Martinčić-Ipšić (4256092)

“…<p>Shown are the same quantities as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0181079#pone.0181079.g002" target="_blank">Fig 2</a>. …”

Intra-cellular processes of cancer cells associated with their signalling with CAFs. by Alice Chiodi (7403252)

“…<p>The processes are ranked from top to bottom by decreasing value of <i><i>s</i></i>; squares indicate processes that were not found in the analysis of intra-cellular crosstalks; link colour indicates statistical evidence (as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0334981#pone.0334981.g002" target="_blank">Figs 2</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0334981#pone.0334981.g004" target="_blank">4</a>), with the exception that, here, the dashed line replaces the white colour in indicating that both null models are above <i>α</i> = 0.01.…”

Enhancement of the by Holger Perfahl (224866)

“…</b> For the numerical experiments indicated in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0014790#pone-0014790-g005" target="_blank">Figure 5(A)</a>, on a domain, we show: <b>A</b>) the volume fraction of normal cells (red line, for simulations with normal cells only) or cancer cells (blue line, for simulations where a tumour is implanted) at their long-time value averaged over several simulations. …”

Accesibility of experimental FLs. by Marcin Zagorski (3389246)

“…<p>Panels (a-c): data from Rowe et al. [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1005218#pcbi.1005218.ref039" target="_blank">39</a>], panels (d-f): data from Guenther et al. …”

Elastic properties of an ensemble of myosin Ic molecules. by Florian Berger (4050247)

“…For a constant force of 20 pN an ensemble of <i>N</i> = 10 heads relaxes about 20 nm after decreasing the binding probability by a 100-fold (red line). …”

For experimental data, too, recording length has little effect on estimated total history dependence, but larger impact on the estimated information timescale. by Lucas Rudelt (4059505)

“…With 10 minutes and more, one estimates around ≈ 75% or more of the <i>τ</i>_<i>R</i> that is estimated on a 90 minute recording. …”

Temperature regimes for experimental evolution with varying rates of thermal change. by Sonia Singhal (459557)

“…See also <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0189602#pone.0189602.s002" target="_blank">S2 Table</a>.…”

Recommended interventions for improving yield in CBSD infected fields in selected regions based on whitefly abundance, host density, and disease pressure. by Alex C. Ferris (9079498)

“…Recommendations are listed in order of decreasing impact on yield. For locations A and B, low intensity interventions are effective but high intensity would work better; however, for location C only high intensity is likely to be effective (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007823#pcbi.1007823.t002" target="_blank">Table 2</a>).…”

Non-normalized data using variance and covariance, using the full set of 352 subjects. by Takuya Ito (57473)

“…<p><b>Variance and covariance decreased during task states in human fMRI data.</b> We successfully replicated results from <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007983#pcbi.1007983.g003" target="_blank">Fig 3</a> using, but without z-normalizing the time series (and using covariance instead of correlation). …”

The experimental setup of this study. by Francesco Pomati (444621)

“…Large black boxes represent experimental racks deployed at different depths (1, 3 and 6 m); coloured inner boxes (microcosms) represent different treatments (Figs <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0174207#pone.0174207.g002" target="_blank">2</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0174207#pone.0174207.g003" target="_blank">3</a>), and different shapes inside microcosms represent different trait combinations at the start of the experiment.…”

DataSheet_1_Platinum-based drug-induced depletion of amino acids in the kidneys and liver.docx by Katerina Mitrevska (13841839)

“…The treatment of the liver with the selected drugs affected different amino acids; however, Leu and Arg were decreased after all treatments. The treatment of the kidneys with CDDP mostly affected Val; PtNPs-10 decreased Val, Ile and Thr; and PtNPs-40 affected only Pro. …”

Unhinging pathway of FimH under tensile force in MD simulations. by Pavel Aprikian (221712)

“…<p>(a) Location of the hinge axis (stereoview) determined with the program DynDom <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000617#pbio.1000617-Hayward1" target="_blank">[61]</a> by comparing the conformation of FimH at the end of the run pull 1 with its native conformation. …”

Influence spheres of numerosities containing either two or three items. by Peter Kramer (228750)

“…In Durgin's version of the model <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0017378#pone.0017378-Durgin1" target="_blank">[17]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0017378#pone.0017378-Durgin2" target="_blank">[18]</a>, influence-sphere size decreases with dot density, and occupancy is normalized by dividing it by influence-sphere size.…”

Proteomic profiling of vocal fold and co-cultivated construct samples. by Tanja Grossmann (6458798)

“…Proteins are sorted in a decreasing manner according to their mean LFQ intensity values (A,C). …”

Microbiota distinguishability and classification ability across ethnicities. by Andrew W. Brooks (3353867)

“…(B) Average ROC curves (for 10-fold cross-validation) and prediction performance metrics for one-versus-all RF classifiers for each ethnicity, using SMOTE [<a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.2006842#pbio.2006842.ref033" target="_blank">33</a>] and down subsampling approaches for training. …”

Duration of CSD for different vascular responses. by Joshua C. Chang (445485)

“…<p>Shown are CSD durations plotted against percent dilation <i>b</i> (the maximum vasodilation), constriction parameter <i>a</i> (this parameter from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0070469#pone.0070469.e064" target="_blank">Eq. (10)</a> has the units of mM and is the width of a Gaussian curve that controls how fast <i>r</i> drops as [K⁺] increases), and oxygen coupling constant γ. …”

Relative mRNA abundances in the milk fat layer during mature lactation. by Danielle G. Lemay (105771)

“…<b>Inset:</b> For direct comparison, we used the same approach to examine the top 500 expressed genes in the milk fat layer during mature lactation from a microarray array experiment <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0067531#pone.0067531-Maningat1" target="_blank">[10]</a>; note the markedly narrower range in relative abundances. …”

Low abundance taxa binned at the genera level that are significantly associated with ASD, FGID or ASD*FGID first order interactions. by Joshua S. Son (762316)

“…The FDRs are also listed for two genera, Sutterella and Provetella, which have been previously reported to be increased and decreased, respectively, in ASD children compared to unrelated control children [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0137725#pone.0137725.ref010" target="_blank">10</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0137725#pone.0137725.ref011" target="_blank">11</a>].…”

Data_Sheet_1_The Effects of Repetitive Use and Pathological Remodeling on Channelrhodopsin Function in Cardiomyocytes.PDF by Balázs Ördög (3342644)

“…On repetitive activation at increasing frequencies (10-ms pulses at 1–10 Hz for 30 s), peak currents, which are important for cardiac pacing, decreased with increasing activation frequencies by 17–78% (p < 0.05), while plateau currents, which are critical for arrhythmia termination, decreased by 10–75% (p < 0.05), both in a variant-specific manner. …”