<i>Technical reproducibility and intra-individual variation of ƒ</i>. by Tommaso Rondelli (102936)

“…<p>(A) In this plot we show ƒ values of 45 split samples (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0054046#s2" target="_blank">Methods</a>). …”

Effect of AP-2 depletion on the formation of clathrin-coated structures at the plasma membrane of BSC1 cells. by Emmanuel Boucrot (249080)

“…The left hand panels at the left correspond to central optical sections of cells incubated with 10 µg/ml Tf-A647 for 10 min at 37°C. They show accumulation of Tf in endosomal structures in the control cells and Tf on the plasma membrane in AP-2 depleted cells (Bar, 10 µm). …”

Negative autoregulation can make the temporal response slower. by Andras Gyorgy (535338)

“…To do so, we pick the same value of in the case of the regulated systems (, , for A, B and C, respectively), but a different one for for the unregulated system (, , for A, B and C, respectively), such that the steady states match (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003486#s4" target="_blank">Methods</a> for parameter ranges). …”

Fis1ΔTM membrane binding requires negatively charged lipids. by Robert C. Wells (348960)

“…<p>A vesicle sedimentation assay was used to measure fraction of Fis1ΔTM bound to lipid vesicles as a function of decreasing concentration of anionic DOPG at pH 5.0(A) or pH 7.0(B). …”

LC3-associated phagocytosis (LAP) by Granulocytes. by Hyojung Kwon (607392)

“…Based on the green fluorescence intensity, two peaks were identified, LC^low and LC^high. (A2 and E2) 11.40% of granulocytes at 24 h post infection and 1.39 h post infection and 1.39% of granulocytes at 0 h post infection were in the LC h post infection were in the LC^high region, and approximately 10% of GFP-stained hemocytes were increased in the LC^low region at 24 h post infection. …”

Exploration of model space using Markov-chain Monte Carlo. by August George (9079454)

“…Models are initially at a high energy but quickly find local minima. A tempering schedule (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007884#pcbi.1007884.s001" target="_blank">S1 Text</a>) of alternating temperature increases and decreases prevents the simulation from being trapped in local minima.…”

Genes most significantly altered in MPS VII brain. by Michael K. Parente (179564)

“…The key is the same as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0032419#pone-0032419-g002" target="_blank">Fig. 2</a>.…”

Sensitivity analysis. by Frederik Van de Steen (13799477)

“…The group BMA results (i.e. the middle panels of <b>Figs <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009988#pcbi.1009988.g004" target="_blank">4</a> and <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009988#pcbi.1009988.g005" target="_blank">5</a></b>) are provided in the lower part for comparison. …”

Identification of differentially expressed liver proteins. by Xueyuan Jiang (375166)

“…a<p>Numbering corresponds to the 2-DE gel in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0080698#pone-0080698-g001" target="_blank">Fig.1</a>.…”

Comparison of HTS datasets from the RNA titration experiment (500–5 ng) using the PE method. by Ulrike Menzel (561225)

“…Average numbers of reliably detected CDR3s, frequency and abundance ranges, and the percentage of reads corresponding to reliably detected CDR3s are summarized in Table S1 in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0096727#pone.0096727.s001" target="_blank">File S1</a>.…”

Multiple species alignment of the death domain of EDAR. by Jarosław Bryk (47108)

“…An asterisk indicates the site at which an Arg-His substitution causes decreased activation of NF-κB <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0002209#pone.0002209-Shimomura1" target="_blank">[28]</a>.…”

Table_1_Evolution of Penicillin Non-susceptibility Among Streptococcus pneumoniae Isolates Recovered From Asymptomatic Carriage and Invasive Disease Over 25 years in Brazil, 1990–2... by Tatiana Castro Abreu Pinto (6456026)

“…Such a difference can be attributed to the serotypes that emerged in each clinical source after PCV10 usage. …”

Behavioural performance in the effort (left panel) and delay (right panel) discounting task. by Mani Erfanian Abdoust (14295610)

“…(<b>c</b>) Similarly, the tendency to choose the high-cost option decreased as a function of increasing levels of effort and delay. …”

Parametric analysis of termination modes and restitution curve slope. by Patric Glynn (522246)

“…<p>(<b>A</b>) Unless otherwise indicated, each model parameter was decreased stepwise from its control value until spontaneous activity terminated or the value reached zero. …”

Gene expression changes of SREBP1 targets in fasted and refed HepG2 cells. by Brian D. Reed (51522)

“…The enrichment score is a running sum statistic that, beginning with the top-ranking gene, increases when an SREBP1 target gene is encountered and decreases otherwise <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000133#pgen.1000133-Subramanian1" target="_blank">[27]</a>. …”

Variability and developmental changes in frequency-dependent bursting of subicular neurons. by Sungkwon Chung (71502)

“…Sample responses to sEPSC injection at 5, 7, and 10 Hz in a neuron from a P30,36 control rat. The current injection is shown schematically below the 10 Hz trace. …”

Numbers and phenotypes of memory CD8+ T cells. by Peter J. Holst (2217445)

“…<b>c)</b> Pools of cells (4 mice per group) from the mice shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117242#pone.0117242.g002" target="_blank">Fig. 2e-f</a> were stimulated with decreasing amounts of NP396. …”

Defining the orientational order parameter <i>Q</i>₄. by Guillaume Salbreux (142683)

“…<b>C</b>) The magnitude of the fourth order parameter ranges from 0 to 1 and increases as variability in the orientation of the crosses decreases. (See also <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002618#s4" target="_blank">Methods</a>.)…”

miRNA and isomiR profiles in MIN6 cells, primary human beta cells and human islet. by Jeanette Baran-Gale (456176)

“…(<b>B</b>) The x-axis depicts highly expressed miRNAs ordered from left to right by decreasing maximal expression across all samples. The y-axis depicts the Log10 of the average read count per million. …”

Friends as sensors yield early detection of the use of hashtags. by Manuel Garcia-Herranz (549453)

“…<p>a) Measures of lead times based on simulations of an infection spreading through a network with infection probability and recovery probability on a Barabasi-Albert random network with tail exponent show that a sensor group tends to provide earlier warning than a randomly-chosen control group in smaller samples, but decreasing sampling variation in larger sample sizes means that the statistical likelihood of providing early warning is maximized in moderately-sized samples. b) Observed results for hashtags on Twitter used by 1% of the individuals using a hashtag of each sample. c) Average lead time of first usage of each hashtag in the sensor group vs. the control group for all hashtags used by at least 10 users in each of 5 random samples of 50,000 random users.…”