The quartile analyses of the ratios of average cellular effective strain to extracellular matrix (ECM) effective strain for the four cases considered in the material sensitivity st... by Scott C. Sibole (321901)

“…<p>In agreement with <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0037538#pone.0037538-Michalek1" target="_blank">[41]</a>, scaling of material properties while maintaining ratio (Study and Study ×10) does not strongly impact chondrocyte deformation, but modifying the stiffness ratio between micro-scale components, i.e. by decreasing pericellular matrix stiffness by tenfold (Study PCM/10), does.…”

The optimal decision threshold and effort parameters for different values of the cost of time. by Adrian J. de Froment (676829)

“…We define fitness as net gain: deciding correctly brings a benefit, but the time and effort involved in each decision impose a cost (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003937#s4" target="_blank">Methods</a> for details). …”

<i>In vitro</i> endothelial cell functional assay. by Mehrdad Khajavi (235140)

“…<p><b>A)</b> HMVEC migration in response to full serum media (FSM) was significantly decreased when cells were transfected with PADI2-specific siRNA compared to scramble siRNA control. …”

Spontaneous Frequency Does Not Control Model Responses to Depolarization Block. by Christopher J. Knowlton (11450436)

“…<p><b>A</b>. Increasing g_SK from 20 to 50 μS/cm² and decreasing g_LNa from 3 μS/cm² to 2.9 μS/cm² in the atypical model decreases basal firing rate to 2.2 Hz. …”

Magnitude and frequency of epileptic discharges before and during cooling. by Jaymar Soriano (4494451)

“…Frequency of epileptic discharges also decreased during cooling in most cases (right) with slight increases seen in some cases (<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1005736#pcbi.1005736.g001" target="_blank">Fig 1</a>). …”

Data_Sheet_1_Co-metabolic Effect of Glucose on Methane Production and Phenanthrene Removal in an Enriched Phenanthrene-Degrading Consortium Under Methanogenesis.pdf by Ziyan Zhou (6723317)

“…Moreover, glucose addition significantly decreased the microbial α-diversity (from 2.59 to 1.30) of the enriched consortium but showed no significant effect on the microbial community (R²=0.39, p=0.10), archaeal community (R²=0.48, p=0.10), or functional profile (R²=0.48, p=0.10). …”

OPLS-DA of the metabolite profiles of RA and non-RA groups. by Sooah Kim (571260)

“…<p>(a) Score plot of the OPLS-DA model for RA and non-RA groups (t<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0097501#pone.0097501-Cammarata1" target="_blank">[1]</a>P, score of the non-orthogonal component; t<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0097501#pone.0097501-Litwin1" target="_blank">[2]</a>O, score of the orthogonal component). …”

Dysregulated LncRNA profile in the plasma of I/R-treated mouse. by Zhenzhen Chen (490585)

“…Increased LncRNAs was presented in panel A, whereas decreased LncRNAs presented in panel B. …”

HIV-infected NHBE ALI cultures shows reduced levels of HIV receptors and secrete functional Tat. by S. Chinnapaiyan (3621965)

“…HIV BaL infected NHBE ALI cultures show decreased CD4 and CCR5 expression. <b>Panel B</b>: NHBE ALI cultures redifferentiated at the Air-Liquid Interface were infected with HIV IIIB strain as described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0169161#pone.0169161.g002" target="_blank">Fig 2</a>. …”

Qualitative analysis of the numerical model of pacemaker interactions for the <i>light</i> condition. by Anna Lisa Stöckl (198415)

Temperature and precipitation change during 1951–2002. by Evan H. Girvetz (256065)

“…<p>Maps of the magnitude (left) and confidence (right) for annual mean temperature (top) and precipitation trends during 1951–2002 for each 0.5 degree grid cell in the CRU TS 2.1 data set <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0008320#pone.0008320-Mitchell1" target="_blank">[10]</a>. …”

Local single-factor sensitivity analysis for three simulation regimes. by Josua O. Aponte-Serrano (9904912)

“…<p>(A) “Baseline” corresponds to the baseline parameters in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008874#pcbi.1008874.t002" target="_blank">Table 2</a>. …”

Sequential identification of the genetic groups through model-based analysis as revealed by the different marker systems and comparison of the most relevant model-based structure (... by Sophie Bouchet (177842)

“…For each dataset, 171 accessions were ordered according to DArT assignments, with a decreasing proportion of genome assigned to the main groups according to STRUCTURE at K = 10. …”

Time series at stripe-edge positions. by David M. Holloway (95831)

“…In general, repression decreases the occurrence of high initiation intervals and increases the frequency of low initiation intervals, compare (D) and (H) to the stripe-center (non-repressed) expression in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0176228#pone.0176228.g005" target="_blank">Fig 5D</a>. …”

The escape trajectory in the cost-benefit plane bends over time due to CTL decay. by Rebecca Batorsky (651799)

“…<p>Fitness costs and recognition losses are randomly generated for 100 sites (10 epitopes with 10 sites per epitope) in order to study the sequence of escaped sites (black line) in the whole genome without CTL decay (A,B) or with CTL decay (C,D) for 1000 simulation runs. …”

Ultrasensitive dependence of the overall elongation rate on EF-Tu concentration in <i>E. coli</i>. by Sophia Rudorf (169011)

“…<p>A) Theoretical predictions for <i>E. coli</i> growing at a specific growth rate of 2.5 h⁻¹ with a physiological EF-Tu concentration of about 250 μM (blue dashed line) [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1006979#pcbi.1006979.ref032" target="_blank">32</a>]. …”

The phenomenological continuum model is consistent with the original prediction that PIEZO1 hinders coordinated directionality in wound closure. by Jinghao Chen (5145005)

“…<p><b>(A)</b> Cumming plots showing simulation results using the calibrated phenomenological continuum model (denoted as PCM, see Section 7 in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011855#pcbi.1011855.s001" target="_blank">S1 Text</a>) to predict how PIEZO1 affects normalized wound closure (<i>left</i>) and wound edge length (<i>right</i>) in simulated Control_GoF monolayers (<i>blue</i>), <i>Piezo1</i>-GoF monolayers without altered coordinated directionality parameters (<i>orange</i>), and <i>Piezo1</i>-GoF monolayers with cell coordinated directionality decreased (<i>green</i>). …”

Differential ZAP-70 affinity and sequential phosphorylation produces ultrasensitivity. by Himadri Mukhopadhyay (396296)

“…The heat map is repeated using an alternate measure of sensitivity in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003004#pcbi.1003004.s003" target="_blank">Fig. …”

Saccade latencies in TMS or no-TMS trials. by Antoni Valero-Cabre (159701)

“…Decreases in normalized AS latency differences suggest a TMS-induced acceleration of AS preparation time with regards to the observed effects for sham TMS (white columns) or active TMS (black columns) in a control site and vice-versa. …”

Contrast adaptation depends on terminal size: comparison of model and experiment. by Tom Baden (172777)

“…Spearman correlation = −0.86, critical value (<i>p</i> = 0.05) = 0.45. See also <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001972#pbio.1001972.s005" target="_blank">Figure S5</a>.…”