Table_4_Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis.xlsx by William L. Poehlman (7598351)

“…Following gene expression quantification, we identified 1,758 differentially expressed genes at various time points. We constructed a gene co-expression network (GCN) from the same data and identified link community modules (LCMs) that were comprised entirely of differentially expressed genes at specific time points post-inoculation. …”

Image_1_Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis.tif by William L. Poehlman (7598351)

“…Following gene expression quantification, we identified 1,758 differentially expressed genes at various time points. We constructed a gene co-expression network (GCN) from the same data and identified link community modules (LCMs) that were comprised entirely of differentially expressed genes at specific time points post-inoculation. …”

Table_5_Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis.xlsx by William L. Poehlman (7598351)

“…Following gene expression quantification, we identified 1,758 differentially expressed genes at various time points. We constructed a gene co-expression network (GCN) from the same data and identified link community modules (LCMs) that were comprised entirely of differentially expressed genes at specific time points post-inoculation. …”

Table_2_Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis.xlsx by William L. Poehlman (7598351)

“…Following gene expression quantification, we identified 1,758 differentially expressed genes at various time points. We constructed a gene co-expression network (GCN) from the same data and identified link community modules (LCMs) that were comprised entirely of differentially expressed genes at specific time points post-inoculation. …”

Model to explain Apn-mediated larval tracheal tube growth. by Kassiani Skouloudaki (167949)

“…It fails to be recycled (as shown by the lack of colocalization with Rab11), but is also not degraded, pointing to a functional defect of the retromer.</p>…”

Bump diffusion due to input and spiking noise. by Raymond Wang (7527374)

“…(<b>A</b>) Diffusion decreases with bump number under linear mapping and remains largely constant under circular mapping. …”

Islet histology in ß-ARNT and floxed control mothers. by Sue Mei Lau (476326)

“…<p>(A–B) Representative images of insulin immunofluorescence on islets from a floxed control (A) and ß-ARNT (B) mouse in late pregnancy. …”

Topo IIβ is required for the induction of selective genes in differentiating cerebellar granule cells. by Kuniaki Sano (268855)

“…The result shown here is sorted by <i>P</i>-values for A1 group in the decreasing order of statistical significance. …”

Conditional cooperators' strategies (almost) do not change over time. by Jelena Grujić (298149)

“…Straight lines are the fit appearing in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013749#pone-0013749-g002" target="_blank">Figure 2</a>, whereas points are the strategies as obtained only from the first 20 rounds (full symbols) and only from the last 20 rounds (empty symbols). …”

Left versus right ventricular ejection fraction. by Bastiaan J. van Nierop (279020)

“…<p>Relationship between left (LV) and right ventricular (RV) ejection fraction (EF) for all mice at all time points. The right ventricular ejection fraction progressively decreased (black arrow) in the severe TAC group only and that the changes in RVEF were preceded by a decline in LVEF apparent from the shift of the majority of the measurement points to the left.…”

GPS NMR score plots from spectra with very low signal-to-noise or very low resolution. by Anders Malmendal (125546)

“…<p>(A) Spectra of apo BLA: 1.2 mM acquired with 128 scans described using 275 data points (0.02 ppm; thin black line), 1.2 µM acquired with 4 scans described using 275 data points (0.02 ppm; thin red line), or 1.2 mM acquired with 128 scans described using 4 data points (1.2 ppm bins; thick blue lines), and GPS NMR 2D score plots for the titration of BLA with SDS (B) using the data with decreased concentration and acquisition time and (C) using the data with decreased resolution. …”

Evolution of the propensity for sex in adapting and control populations measured under standardized conditions. by Lutz Becks (167357)

“…<p>The propensity for sex is measured as percentage of females induced to sexual reproduction when exposed to a standardized stimulus. Data points represent the mean of five replicate populations per treatment ±1 standard error. …”

Nonmetric multidimensional scaling (MDS) plot. by Tamara García-Armisen (425069)

“…Increasing distance between points equates to decreasing similarity in BCC. MDS plot are based on Bray-Curtis distances generated from square root transformed data. …”

The qualitative results from Fig 2 are preserved with increased carrying capacity, with no constitutive growth (λ₀). by Alexander S. Moffett (8250291)

“…As with the results in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010292#pcbi.1010292.g002" target="_blank">Fig 2</a>, QS decreases cheater fixation probability but also decreases mean extinction time as compared with AO. …”

Kinetics of PI(3,4,5)P3 hydrolysis by PTEN at different concentrations of YFP-PHGrp1. by Chun Liu (47227)

“…<p>(A) The membrane composition is 0.2% PI(3,4,5)P3 + 5% DOPS + 0.2% PI(4,5)P2 + 94.4% DOPC + 0.2% TR-DHPE and the bulk concentration of YFP-PHGrp1 is 100 nM (square), 150 nM (circle), 300 nM (triangle), and 600 nM (down-pointing triangle), respectively. …”

Individual effects of hamstring surgery on ST morphology. by Helga Haberfehlner (3353090)

“…<p>Muscle belly length and tendon length were measured at knee angles corresponding to 0 Nm (A, B), 4 Nm (C, D) and at 65° knee flexion angle (E, F). …”

Dual effects upon the latencies to SWS and REM sleep after selective SNpc lesion. by Marcelo M.S. Lima (74920)

“…<p>(a) Latency to SWS showed to be decreased at all time-points after MPTP exposure, in both light and dark periods. …”

Sensitivity analysis of the parameter. by Michael Simonov (325702)

“…<p>Graphs depicting 10 representative parameter sets, plotting viral load at various time points over varied values for . Each distinct curve represents simulations obtained from a single, randomly determined, physiological parameter set. …”

Genome Sequencing and <i>de novo</i> Assembly Statistics. by Henry S. Gibbons (123197)

“…</p>c<p>The average read length of this sample was considerably lower (239 versus >300) for other genomes in this dataset, resulting in larger number of contigs and decreased assembly quality.</p>d<p>Deletionof 23 kb with clear join points (positions 4,022,138–4,045,817) verified by optical mapping (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0017836#pone-0017836-g004" target="_blank">Figure 4B</a>).…”

Macrophage apoptosis and necrosis. by Lia Danelishvili (249418)

“…<i>M. tuberculosis</i> induced significantly more necrosis of macrophages (64±0.5%) at day 9 (p<0.05) than apoptosis (18±1.8%), compared with uninfected controls. The decreased level of apoptosis during the infection with virulent <i>M. tuberculosis</i> is related to duration of macrophage infection; however, <i>M. tuberculosis</i> triggers a greater level of necrosis at later time points than apoptosis. …”