Presentation_1_Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing.pdf by Bertil Gummesson (8535924)

“…The resulting changes in gene expression are particularly well studied in the case of amino acid starvation. We used deep RNA sequencing in combination with spike-in cells to measure global changes in the transcriptome after valine-induced isoleucine starvation of a standard E. coli K12 strain. …”

Table_12_Metagenomics and metabolomics analysis to investigate the effect of Shugan decoction on intestinal microbiota in irritable bowel syndrome rats.XLS by Lu Hang (14145177)

Video_1_Stability of Zircon and Its Isotopic Ratios in High-Temperature Fluids: Long-Term (4 months) Isotope Exchange Experiment at 850°C and 50 MPa.mov by Ilya N. Bindeman (2843150)

“…Here, we report results of a nano- to micrometer-scale investigation of isotopic exchange using natural zircon from Mesa Falls Tuff (Yellowstone) treated with quartz-saturated, isotopically (¹⁸O, D, ⁷Li, and ¹¹B) labeled water with a nominal δ¹⁸O value of +450%0 over 4 months at 850°C and 50 MPa. …”

Presentation_1_Stability of Zircon and Its Isotopic Ratios in High-Temperature Fluids: Long-Term (4 months) Isotope Exchange Experiment at 850°C and 50 MPa.pdf by Ilya N. Bindeman (2843150)

“…Here, we report results of a nano- to micrometer-scale investigation of isotopic exchange using natural zircon from Mesa Falls Tuff (Yellowstone) treated with quartz-saturated, isotopically (¹⁸O, D, ⁷Li, and ¹¹B) labeled water with a nominal δ¹⁸O value of +450%0 over 4 months at 850°C and 50 MPa. …”

Table_1_Stability of Zircon and Its Isotopic Ratios in High-Temperature Fluids: Long-Term (4 months) Isotope Exchange Experiment at 850°C and 50 MPa.XLS by Ilya N. Bindeman (2843150)

“…Here, we report results of a nano- to micrometer-scale investigation of isotopic exchange using natural zircon from Mesa Falls Tuff (Yellowstone) treated with quartz-saturated, isotopically (¹⁸O, D, ⁷Li, and ¹¹B) labeled water with a nominal δ¹⁸O value of +450%0 over 4 months at 850°C and 50 MPa. …”

DataSheet12_Refining dual RNA-seq mapping: sequential and combined approaches in host-parasitic plant dynamics.csv by Carmine Fruggiero (20143830)

Preliminary dose-response experiments. by Noelia Torremadé (3687523)

Image_1_HTLV-1 p12 modulates the levels of prion protein (PrPC) in CD4+ T cells.TIFF by Isabela Silva De Castro (16810386)

“…</p>Results<p>We found that HTLV-1 infection decreased the expression levels of PrP^C and HTLV-1 Orf I encoded p12, an endoplasmic reticulum resident protein also known to affect post-transcriptionally cellular proteins such as MHC-class I and the IL-2 receptor. …”

Tissue and Serum microRNAs in the Kras^G12D Transgenic Animal Model and in Patients with Pancreatic Cancer by Joseph J. LaConti (215866)

“…We report that changes in miR expression patterns during progression of normal tissues to invasive pancreatic adenocarcinoma in the p48-Cre/LSL-Kras^G12D mouse model mirrors the miR changes observed in human pancreatic cancer tissues. miR-148a/b and miR-375 expression were found decreased whereas miR-10, miR-21, miR-100 and miR-155 were increased when comparing normal tissues, premalignant lesions and invasive carcinoma in the mouse model. …”

Image_3_HTLV-1 p12 modulates the levels of prion protein (PrPC) in CD4+ T cells.tif by Isabela Silva De Castro (16810386)

“…</p>Results<p>We found that HTLV-1 infection decreased the expression levels of PrP^C and HTLV-1 Orf I encoded p12, an endoplasmic reticulum resident protein also known to affect post-transcriptionally cellular proteins such as MHC-class I and the IL-2 receptor. …”

Image_4_HTLV-1 p12 modulates the levels of prion protein (PrPC) in CD4+ T cells.tif by Isabela Silva De Castro (16810386)

“…</p>Results<p>We found that HTLV-1 infection decreased the expression levels of PrP^C and HTLV-1 Orf I encoded p12, an endoplasmic reticulum resident protein also known to affect post-transcriptionally cellular proteins such as MHC-class I and the IL-2 receptor. …”

Image_2_HTLV-1 p12 modulates the levels of prion protein (PrPC) in CD4+ T cells.TIFF by Isabela Silva De Castro (16810386)

“…</p>Results<p>We found that HTLV-1 infection decreased the expression levels of PrP^C and HTLV-1 Orf I encoded p12, an endoplasmic reticulum resident protein also known to affect post-transcriptionally cellular proteins such as MHC-class I and the IL-2 receptor. …”

Cis-acting elements in the promoter of PtWRKYs. by Yuzhao Ma (12840632)

“…Under cadmium toxicity, <i><i>the plant</i></i> height of <i><i>PsnWRKY95</i></i>-overexpressing plants increased by 16%−26% compared with the wild type (WT), the root length increased by 12%−27% compared with WT, the peroxidase (POD) activity was 28%−51% higher than that of WT, the chlorophyll content increased by 15%−29% compared with WT, the malondialdehyde (MDA) content decreased by 13%−32% compared with WT, and the electrical conductivity decreased by 9%−20% compared with WT, with the expression levels of <i>POD</i> and <i>HMA1</i> in the overexpressing plants also being higher than those in WT. …”

The Ka/Ks values of PtWRKY paralogous gene pairs. by Yuzhao Ma (12840632)

“…Under cadmium toxicity, <i><i>the plant</i></i> height of <i><i>PsnWRKY95</i></i>-overexpressing plants increased by 16%−26% compared with the wild type (WT), the root length increased by 12%−27% compared with WT, the peroxidase (POD) activity was 28%−51% higher than that of WT, the chlorophyll content increased by 15%−29% compared with WT, the malondialdehyde (MDA) content decreased by 13%−32% compared with WT, and the electrical conductivity decreased by 9%−20% compared with WT, with the expression levels of <i>POD</i> and <i>HMA1</i> in the overexpressing plants also being higher than those in WT. …”

RNA-seq data of WRKY genes. by Yuzhao Ma (12840632)

“…Under cadmium toxicity, <i><i>the plant</i></i> height of <i><i>PsnWRKY95</i></i>-overexpressing plants increased by 16%−26% compared with the wild type (WT), the root length increased by 12%−27% compared with WT, the peroxidase (POD) activity was 28%−51% higher than that of WT, the chlorophyll content increased by 15%−29% compared with WT, the malondialdehyde (MDA) content decreased by 13%−32% compared with WT, and the electrical conductivity decreased by 9%−20% compared with WT, with the expression levels of <i>POD</i> and <i>HMA1</i> in the overexpressing plants also being higher than those in WT. …”

Analysis of PtWRKY genes. by Yuzhao Ma (12840632)

“…Under cadmium toxicity, <i><i>the plant</i></i> height of <i><i>PsnWRKY95</i></i>-overexpressing plants increased by 16%−26% compared with the wild type (WT), the root length increased by 12%−27% compared with WT, the peroxidase (POD) activity was 28%−51% higher than that of WT, the chlorophyll content increased by 15%−29% compared with WT, the malondialdehyde (MDA) content decreased by 13%−32% compared with WT, and the electrical conductivity decreased by 9%−20% compared with WT, with the expression levels of <i>POD</i> and <i>HMA1</i> in the overexpressing plants also being higher than those in WT. …”

The primer sequences for RT-qPCR. by Yuzhao Ma (12840632)

“…Under cadmium toxicity, <i><i>the plant</i></i> height of <i><i>PsnWRKY95</i></i>-overexpressing plants increased by 16%−26% compared with the wild type (WT), the root length increased by 12%−27% compared with WT, the peroxidase (POD) activity was 28%−51% higher than that of WT, the chlorophyll content increased by 15%−29% compared with WT, the malondialdehyde (MDA) content decreased by 13%−32% compared with WT, and the electrical conductivity decreased by 9%−20% compared with WT, with the expression levels of <i>POD</i> and <i>HMA1</i> in the overexpressing plants also being higher than those in WT. …”

Loss of <i>Atg12</i>, but not <i>Atg5</i>, in pro-opiomelanocortin neurons exacerbates diet-induced obesity by Ritu Malhotra (683202)

“…Here, we demonstrate that ATG12 has distinct functions from ATG5 in pro-opiomelanocortin (POMC)-expressing neurons. …”

Image 12_The role of TMEM59L in colorectal cancer progression and its interaction with the TGF-β/Smad pathway.jpeg by Hongjie Yang (383059)

Data_Sheet_1_Mitochondrial stress-induced H4K12 hyperacetylation dysregulates transcription in Parkinson’s disease.PDF by Minhong Huang (14192639)

“…Following our delineation of the proteasome dysfunction that possibly contributes to H4K12ac deposition, we characterized the altered transcriptional profile and disease-associated pathways in the MitoPark mouse model of PD. …”