Trends associated with protein abundance profiles and doses of ionizing radiation. by Qibin Zhang (8698)

“…Each line represents profile of one protein with increasing doses of ionizing radiation along the x axis. A) 97 proteins with their abundances decreased; B) 9 proteins with their abundances increased; C) 21 proteins with their abundances highest at 10 cGy; D) 8 proteins with their abundances lowest at 10 cGy. …”

Fig 2 - by Tatsuya Nishikawa (4108258)

“…The case numbers correspond with those in Tables <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0275865#pone.0275865.t002" target="_blank">2</a>–<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0275865#pone.0275865.t004" target="_blank">4</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0275865#pone.0275865.g002" target="_blank">Fig 2</a>. …”

Growth regulator and maize response to the increase in plant density by Lucieli Santini Leolato (4703710)

“…The growth regulator was sprayed at a rate of 150 g a.i. ha-1, when hybrid P30F53YH was at the V5 and V10 growth stages. …”

The Genome-Wide Distribution of <i>p</i>-Values under Different Scenarios by María José Aranzana (3270744)

“…ANOVA was used instead of the nonparametric Kruskal–Wallis test to make it possible to use population structure as cofactor (cf. [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.0010060#pgen-0010060-b014" target="_blank">14</a>]). …”

Lymphocyte Counts are Dynamic and Associated with Survival after Transcatheter Aortic Valve Replacement by Sadeer G. Al-Kindi (5770220)

“…Baseline neutrophil and monocyte counts were not associated with mortality whereas a higher ALC before TAVR was strongly associated with decreased mortality independent of age, gender, or Society of Thoracic Surgeons (STS) risk score (STS-adjusted HR: 0.40 [0.21–0.77] per 10⁹/L, <i>p</i> = 0.006).…”

Temporal evolution of the global effect on attentive trials at the beginning of the test phase. by Sébastien Marti (544337)

“…Panel C and D represent the mean amplitude across subjects for the same sensors and time windows as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0107227#pone-0107227-g003" target="_blank">figure 3B</a> for trials 1 to 10 (for display purposes, data points were smoothed using a moving average with a window of 1). …”

Weighted average replication rate of transmitted strains for different values of cross-reactive immunity (). by Fabio Luciani (207782)

“…<p>This figure is obtained by combining <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000565#pcbi-1000565-g002" target="_blank">Figures 2A and 2C</a> (see the main text). …”

Numerical integration of the rate equations of the MerB reaction mechanism by Pedro Silva (532059)

“…</p> <p> </p> <p>Syntax is:</p> <p> </p> <p>HgMerB_kinetics [initial concentration of organomercurial (optional)] [number of steps with timestep tightening] [initial_timestep][pH] [type of molecule] [how many seconds of kinetic information you want] [HgMerB (or free MerB) concentration] [concentration of the Hg-removing molecules tested] [barriers in kcal.mol-1 for the 38 reaction steps] [name of output file]</p> <p> </p> <p>Type of molecule is : 1 for MerA, 2 for dithiothreitol, 3 for GSH or other monothiols</p> <p>Notes on the algorithm:</p> <p> </p> <p>A) concentrations are output whenever :</p> <p>A1) concentration of HgMerB decreases by 1%, or</p> <p>A2) concentration of product increases by 1% of initial MerB concentration, or</p> <p>A3) 10^7 integration timesteps have elapsed since the last output (or 3*10^5, if less than 10^7 integration timestpes have elapsed since the beginning of the simulation)</p> <p> </p> <p>B) Integration timestep is scaled to ensure that the concentration of every intermediate does not increase more than 10% of its previous concentration. …”

Synchronization modulation significantly increased TEP. by Vu Tran (383802)

“…TEP returned to resting values in∼10 mins. Setting the stimulator to elicit a constant or decreasing oscillation frequency showed no TEP response. …”

Results from sample M1 and V simulations. by Orkun S. Soyer (242985)

“…The resulting networks from these simulations are shown in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000907#pcbi-1000907-g003" target="_blank">Figure 3</a>.…”

Prebiotic Effects of Wheat Arabinoxylan Related to the Increase in Bifidobacteria, Roseburia and Bacteroides/Prevotella in Diet-Induced Obese Mice by Audrey M. Neyrinck (152770)

“…</p> <h3>Methodology/Principal Findings</h3><p>Mice were fed either a control diet (CT) or a HF diet, or a HF diet supplemented with AX (10% w/w) during 4 weeks. …”

Modulation of damping rate of <i>δ</i>–activity subjected to excitatory and inhibitory synaptic time constants. by Meysam Hashemi (4114738)

“…<p>(A) The <i>δ</i>–peak damping rate slightly decreases by the increase in <i>β</i>_<i>e</i>, whereas (C) it considerably decreases as <i>β</i>_<i>i</i> increases. …”

Metabolic signature of aging and longevity in serum. by Sebastiano Collino (385873)

“…<p>Targeted LC/MS metabonomics on the aging cohort (young, elderly, and centenarians) revealed three trends within the identified markers. (A) Set of metabolites that decreased/increased within age. …”

Cross plot of the calcification intensity (expressed as area density, AD) and shell size of <i>Globigerina bulloides</i> sampled from March 2002 until April 2003 with sediment trap... by Manuel F. G. Weinkauf (541606)

“…<p>Raw data values (gray dots) are plotted alongside the regression line from a Kendall–Theil robust line fitting. (A) The AD of shells of <i>G. bulloides</i> is decreasing when the species becomes more abundant (compare <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0148363#pone.0148363.t005" target="_blank">Table 5</a>). …”

Synchronization of islets and model islets by randomly-spaced CCh pulses. by Joel E. Adablah (6308327)

“…See <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0211832#pone.0211832.s014" target="_blank">S14</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0211832#pone.0211832.s015" target="_blank">S15</a> Figs for the remaining two groups of islets stimulated with randomly timed pulses of CCh. …”

Genes identified in Esp1-13Myc mass spectrometry screen implicated in Ty1 transposition. by Krystina L. Ho (714635)

“…<p>^aAll mutants have decreased Ty1 transposition except for <i>YML105C</i> and <i>YOL159C</i> [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005109#pgen.1005109.ref040" target="_blank">40</a>]</p><p>^bMutants that suppress the hypertransposition phenotype of <i>rtt101Δ</i> and <i>med1Δ</i> mutants [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005109#pgen.1005109.ref045" target="_blank">45</a>]</p><p>^c<i>rtt</i> mutants have increased levels of Ty1 transposition [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005109#pgen.1005109.ref043" target="_blank">43</a>]</p><p>^d<i>SPT16</i> is a high-copy suppressor of Ty1-δ insertion mutations [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005109#pgen.1005109.ref050" target="_blank">50</a>,<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005109#pgen.1005109.ref051" target="_blank">51</a>]</p><p>^e<i>spt</i> mutants suppress <i>his4-912δ</i> Ty insertion mutations [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005109#pgen.1005109.ref052" target="_blank">52</a>]</p><p>Genes identified in Esp1-13Myc mass spectrometry screen implicated in Ty1 transposition.…”

The model reproduces measured kymographs both qualitatively and quantitatively. by Sam Walcott (821981)

“…<p>In plots A-C, measurements [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1004599#pcbi.1004599.ref052" target="_blank">52</a>] (replotted on a uniformly consistent scale) are at the top of each panel and simulations are at the bottom. …”

Stress fiber stretch amplitude depends on stretch frequency. by Hui-Ju Hsu (242886)

“…The simulations predict that the stress fibers behave elastically above a saturation frequency of ∼1Hz and that the value of α^* decreases exponentially as frequency decreases below the saturation frequency.…”

Suppression of DNA methyltransferases is sufficient to induce demethylation. by Guolin Chai (49048)

“…<p>(A) Representative Western blot indicates that DNMT1 protein level in H719 cells was significantly decreased in the DNMT1-deficient stable clone when compared to the non-specific oligonucleotide treated control. …”

Complexity of infection by age. by Alexander O. B. Whitlock (5286548)

“…<p>High transmission produced more complex infections at every age, reaching a peak at approximately 100 time steps. Even though older hosts had been exposed to more strains <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008577#pcbi.1008577.s007" target="_blank">S4 Fig</a>), complexity of infection did not increase after this peak, and in fact, slightly decreased with high transmission. …”