Mutual information (MI) selection of PGT-123 epitope positions. by Andrew L. Ferguson (491758)

“…<p>The redundancy spectrum produced by application of the mutual information classification algorithm to the neutralization activity of bnMAb PGT-123 against a panel of 141 HIV-1 pseudoviruses (cf. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0080562#pone.0080562.s001" target="_blank">Table S1</a>) using an IC₅₀ cutoff of 10 µg/ml. …”

Redox couples altered lipolysis. by Albert R. Jones IV (513761)

“…<p>Lipolysis was measured as glycerol release [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0164011#pone.0164011.ref018" target="_blank">18</a>]. …”

Optimal treatment strategies. by Shingo Iwami (266092)

“…(E and F) Chemotherapy and immunotherapy are administered which reduce the number of tumor variant types, induce tumor cell deaths, and replenish specific immune cells. Parameters are (A) 10 of tumor cells are killed per time unit by chemotherapy () and the number of tumor variants decreases to (red), (yellow), (green), (blue), and (purple); (B) the number of tumor variants does not change (), but 10 (red), 20 (yellow), 30 (green), 40 (blue), and 50 (purple) of tumor cells are killed by chemotherapy; (C) growth rates are reduced by 10 by chemotherapy and the number of tumor variants decreases to (red), (yellow), (green), (blue), and (purple); (D) 1 (red), 100 (yellow), and 10,000 (green) immune cells specific to each tumor variant are added into the system by the administration of immunotherapy; (E) 10,000 immune cells specific to each tumor variant are added into the system by immunotherapy, 10 of tumor cells are killed per time unit by chemotherapy, and the number of tumor variants decreases to (red), (yellow), (green), (blue), and (purple) by chemotherapy; and (F) 10000 immune cells specific to each tumor variant are added into the system by the administration of immunotherapy, 10 of tumor cells are killed per time unit by chemotherapy, the number of tumor variants does not change (), and mutation rates are (red), (yellow), and (green).…”

Interaction plots with predicted values for dishonestly claimed earnings and 95% CIs. by Aaron D. Nichols (9238872)

“…All CIs are displayed in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0237007#pone.0237007.t002" target="_blank">Table 2</a>.…”

H12 values in sweeps of varying softness. by Nandita R. Garud (694498)

“…<p>H12 values were measured in simulated sweeps arising from (A) <i>de novo</i> mutations with <i>θ</i>_A values ranging from 10^–2 to 10² and (B) SGV with starting frequencies ranging from 10^–6 to 10^–1. …”

Supplementary Figure S5 by Cass Dedert (12837572)

“…SB216763 did not affect LAMP2A intensity further under HG+PGRN, but significantly decreased LAMP2A intensity under cells treated solely with PGRN. …”

Differences in “sensory information” and “category information” can explain differences in temporal biases reported by earlier studies. by Richard D. Lange (11768146)

“…Numbered references are: [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009517#pcbi.1009517.ref001" target="_blank">1</a>] Kiani et al (2008), [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009517#pcbi.1009517.ref002" target="_blank">2</a>] Nienborg and Cumming (2009), [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009517#pcbi.1009517.ref003" target="_blank">3</a>] Brunton et al (2013), [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009517#pcbi.1009517.ref004" target="_blank">4</a>] Wyart et al (2012), [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009517#pcbi.1009517.ref005" target="_blank">5</a>] Raposo et al (2014), [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009517#pcbi.1009517.ref006" target="_blank">6</a>] Drugowitsch et al (2016). …”

Enhancement of the by Holger Perfahl (224866)

“…</b> For the numerical experiments indicated in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0014790#pone-0014790-g005" target="_blank">Figure 5(A)</a>, on a domain, we show: <b>A</b>) the volume fraction of normal cells (red line, for simulations with normal cells only) or cancer cells (blue line, for simulations where a tumour is implanted) at their long-time value averaged over several simulations. …”

Regions of statistically significant differences of functional subcortical activation as determined by SPM analysis. by Zhuo Wang (18668)

“…<p>Data are for rats with bilateral striatal lesions, sham lesions, during treadmill walking or at rest, and with or without a prior history of exercise training (Groups: Lesion/Walk/No-ET, n = 9; Sham/Walk/No-ET, n = 10; Lesion/Rest/No-ET, n = 10; Sham/Rest/No-ET, n = 9; Lesion/Walk/ET, n = 11; Lesion/Rest/ET, n = 12). …”

Regions of statistically significant differences of functional cerebral cortical activation as determined by SPM analysis. by Zhuo Wang (18668)

“…<p>Data are for rats with bilateral striatal lesions, sham lesions, during treadmill walking or at rest, and with or without a prior history of exercise training (Groups: Lesion/Walk/No-ET, n = 9; Sham/Walk/No-ET, n = 10; Lesion/Rest/No-ET, n = 10; Sham/Rest/No-ET, n = 9; Lesion/Walk/ET, n = 11; Lesion/Rest/ET, n = 12). …”

Relative expression of the Crx and Nrl transcription factors in S334ter-4 Rho retinas. by Vishal M. Shinde (178347)

“…The qRT-PCR analysis of S334ter-4 Rho retinas revealed that the expression of the Nrl and Crx transcription factors decreased in a time-dependent manner in P10-P21 retinas. …”

Link prediction in 25%, 50% and 75% of the links in networks constructed from all the words in tweets of the , , and datasets. by Sanda Martinčić-Ipšić (4256092)

“…<p>Shown are the same quantities as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0181079#pone.0181079.g002" target="_blank">Fig 2</a>. …”

Intra-cellular processes of cancer cells associated with their signalling with CAFs. by Alice Chiodi (7403252)

“…<p>The processes are ranked from top to bottom by decreasing value of <i><i>s</i></i>; squares indicate processes that were not found in the analysis of intra-cellular crosstalks; link colour indicates statistical evidence (as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0334981#pone.0334981.g002" target="_blank">Figs 2</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0334981#pone.0334981.g004" target="_blank">4</a>), with the exception that, here, the dashed line replaces the white colour in indicating that both null models are above <i>α</i> = 0.01.…”

Accesibility of experimental FLs. by Marcin Zagorski (3389246)

“…<p>Panels (a-c): data from Rowe et al. [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1005218#pcbi.1005218.ref039" target="_blank">39</a>], panels (d-f): data from Guenther et al. …”

Elastic properties of an ensemble of myosin Ic molecules. by Florian Berger (4050247)

“…For a constant force of 20 pN an ensemble of <i>N</i> = 10 heads relaxes about 20 nm after decreasing the binding probability by a 100-fold (red line). …”

Unhinging pathway of FimH under tensile force in MD simulations. by Pavel Aprikian (221712)

“…<p>(a) Location of the hinge axis (stereoview) determined with the program DynDom <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000617#pbio.1000617-Hayward1" target="_blank">[61]</a> by comparing the conformation of FimH at the end of the run pull 1 with its native conformation. …”

Temperature regimes for experimental evolution with varying rates of thermal change. by Sonia Singhal (459557)

“…See also <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0189602#pone.0189602.s002" target="_blank">S2 Table</a>.…”

Recommended interventions for improving yield in CBSD infected fields in selected regions based on whitefly abundance, host density, and disease pressure. by Alex C. Ferris (9079498)

“…Recommendations are listed in order of decreasing impact on yield. For locations A and B, low intensity interventions are effective but high intensity would work better; however, for location C only high intensity is likely to be effective (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007823#pcbi.1007823.t002" target="_blank">Table 2</a>).…”

Influence spheres of numerosities containing either two or three items. by Peter Kramer (228750)

“…In Durgin's version of the model <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0017378#pone.0017378-Durgin1" target="_blank">[17]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0017378#pone.0017378-Durgin2" target="_blank">[18]</a>, influence-sphere size decreases with dot density, and occupancy is normalized by dividing it by influence-sphere size.…”

Non-normalized data using variance and covariance, using the full set of 352 subjects. by Takuya Ito (57473)

“…<p><b>Variance and covariance decreased during task states in human fMRI data.</b> We successfully replicated results from <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007983#pcbi.1007983.g003" target="_blank">Fig 3</a> using, but without z-normalizing the time series (and using covariance instead of correlation). …”