Simulation of HIV infection only and progression to AIDS. by Santosh Ramkissoon (115855)

“…At time <i>t</i> = 0 HIV infection starts with viral load <i>V</i> = 0.01 µL⁻¹, CD4 count = 1000 µL⁻¹ and resting macrophage population <i>M_R</i> = 200 µL⁻¹. <i>V</i> rises to a spike of 1300 within the first month and then settles to a quasi-stable set-point within a year with <i>V</i>≈50 and CD4 just above 600. …”

Hierarchical cluster analysis of gene expression changes in three series of DNA microarray experiments by Julia Frunzke (40188)

“…The strains were cultivated in CGXII minimal medium with either 100 mM glucose (Glu), or 100 mM gluconate (Gnt), or 50 mM glucose and 50 mM gluconate (Glu_Gnt). The cluster includes those genes which showed a ≥ fourfold changed mRNA level (increased or decreased) in at least two of the experiments A_Glu and had a -value of ≤ 0.05. …”

FA and glucose oxidations in SCD1-overexpressed cardiac myocytes. by Hiroki Matsui (330019)

“…(B): On the other hand, glucose oxidation was significantly reduced in cardiac myocytes treated with PA (100 µM). (C): PA (50 to 100 µM) induced excessive FA oxidation was attenuated in cardiac myocytes transduced with a MOI of 20 of Ad-SCD1 (▪) in comparison with control cells transduced with Ad-LacZ (□). …”

DataSheet3_Being an older person: modulation of walking speed with geriatric walking motion avatars.CSV by Yusuke Koseki (18449580)

Evaluation of yeast culture and direct-fed microbial on gut histology and serum components of broilers challenged with suboptimal diets under heat stress by Saeed Seifi (4869031)

DataSheet2_Being an older person: modulation of walking speed with geriatric walking motion avatars.PDF by Yusuke Koseki (18449580)

DataSheet1_Being an older person: modulation of walking speed with geriatric walking motion avatars.PDF by Yusuke Koseki (18449580)

Estimation error of adaptive elliptical pooling model. by Seha Kim (9023408)

DataSheet1_Effects of network connectivity on viscoelastic relaxation in transient networks using experimental approach.docx by Takuya Katashima (2180930)

Expression of DNMT1 and DNMT3a Are Regulated by GLI1 in Human Pancreatic Cancer by ShanShan He (184687)

“…When further knocked down the expression of GLI1 by siRNA <em>(</em>mRNA decreased by 88.6±2.1%, protein decreased by 63.5±4.5%), DNMT1 and DNMT3a mRNA decreased by 80.9±2.3% and 78.6±3.8% and protein decreased by 64.8±2.8% and 67.5±5.6%, respectively. …”

A Modification to Enhance the Survival of the Island FDMA Flap by Adding a Skin Bridge by Al Lahham, Salim

“…Methods: This is a case series that includes 9 patients where we describe a technique that has the potential to enhance the survival of the first dorsal metacarpal artery (FDMA) flap and decreases the rate of distal necrosis via addition of a 5-mm skin bridge to the pedicle and by avoiding tunneling. …”
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Comparison of the global phylogenomic characteristics of the commensal and BSI collections. by Judit Burgaya (16734180)

“…We selected the STs present in at least 5 strains in at least one of the two collections. …”

The Yeast Rab GTPase Ypt1 Modulates Unfolded Protein Response Dynamics by Regulating the Stability of <em>HAC1</em> RNA by Nikoleta G. Tsvetanova (149142)

“…We found that Ypt1 protein specifically associated <em>in vivo</em> with unspliced <em>HAC1</em> RNA. …”

Data_Sheet_1_Combined Carbon and Albedo Climate Forcing From Pine and Switchgrass Grown for Bioenergy.pdf by Benjamin J. Ahlswede (12539725)

“…We found that pine had a net positive radiative forcing (warming) of 5.4 ± 2.8 Wm⁻² when albedo and carbon were combined together (30 year mean). …”

Data_Sheet_1_Risperidone Mitigates Enhanced Excitatory Neuronal Function and Repetitive Behavior Caused by an ASD-Associated Mutation of SIK1.PDF by Moataz Badawi (11080101)

“…SIK1-MT protein was distributed in the nucleus and cytoplasm, whereas the distribution of wild-type SIK1 was restricted to the nucleus. We found the disruption of excitatory and inhibitory (E/I) synaptic balance due to an increase in excitatory synaptic transmission and enhancement of neural excitability in the pyramidal neurons in layer 5 of the medial prefrontal cortex in SIK1-MT mice. …”

Table 1_CAMDA 2023: Finding patterns in urban microbiomes.csv by Haydeé Contreras-Peruyero (20320404)

“…We then implemented supervised models conducting 5-fold cross-validation (CV) with a 4:1 training-to-validation ratio. …”

Image_4_Risperidone Mitigates Enhanced Excitatory Neuronal Function and Repetitive Behavior Caused by an ASD-Associated Mutation of SIK1.TIFF by Moataz Badawi (11080101)

“…SIK1-MT protein was distributed in the nucleus and cytoplasm, whereas the distribution of wild-type SIK1 was restricted to the nucleus. We found the disruption of excitatory and inhibitory (E/I) synaptic balance due to an increase in excitatory synaptic transmission and enhancement of neural excitability in the pyramidal neurons in layer 5 of the medial prefrontal cortex in SIK1-MT mice. …”

Identification of <em>Orch3</em>, a Locus Controlling Dominant Resistance to Autoimmune Orchitis, as Kinesin Family Member 1C by Roxana del Rio (108216)

“…Mechanistically, we showed that the resistant <em>Kif1c^D2</em> allele leads to a reduced antigen-specific T cell proliferative response as a consequence of decreased MHC class II expression by antigen presenting cells, and that the L⁵⁷⁸→P⁵⁷⁸ and S¹⁰²⁷→P¹⁰²⁷ polymorphisms distinguishing the BALB/cByJ and DBA/2J alleles, respectively, can play a role in transcriptional regulation. …”

Correlated Evolution of Positions within Mammalian cis Elements by Rithun Mukherjee (280865)

“…We report a <em>Maximum-Likelihood</em> (<em>ML</em>) approach to infer correlated evolution at any two positions within a PWM, based on a multiple alignment of 5 mammalian genomes. …”

Anthropogenic CO2–induced seawater acidification driven the biogeochemical processes of dimethylsulfide in Northwestern Pacific marginal seas by Xuxu Gao (9724883)

“…Low pH can also suppress DMS biological production and microbial consumption rates and increase DMS photolysis rate, resulting in lower DMS emissions. We estimated that the decreased DMS emission caused by seawater acidification, would account for up to 35% of DMS flux in the marginal seas under the RCP8.5 high-emission scenario. …”