IB2d <i>Tomopteris</i> Example by Nicholas Battista (20542367)

“…Biomim. (2025) DOI 10.1088/1748-3190/adad26</li></ul><p>-------------------------------------------------------------</p><p dir="ltr"><b>Grid Parameters</b>: smaller grid size and lower resolution to decrease runtime for this example.</p><ul><li>Domain: [Lx,Ly] = [6,2]</li><li>Resolution: [Nx,Ny] = [768,256]</li></ul><p>-------------------------------------------------------------</p><p dir="ltr"><b>Model Parameters:</b></p><ul><li>Parapodia Length: 0.114*BL</li><li>Paddling Amplitude: 50 degrees (total angle swept)</li><li>Undulation Amplitude: 0.030*BL</li></ul><p>-------------------------------------------------------------</p><p dir="ltr"><b>Data Stored </b>(in .vtk format)</p><p><br></p><ol><li>Lagrangian Points</li><li>Lagrangian Spring Connections</li><li>Fluid Vorticity</li></ol><p dir="ltr"><i>* Can specify other data in input2d file *</i></p>…”

Complete activation of Akt1 and efficient shuttle to nuclei critically depend on mitochondrial phosphorylation of Thr³⁰⁸. by Valeria Gabriela Antico Arciuch (92519)

“…(B) Prevention of Akt1T308A translocation to nucleus causes a decrease in cyclin D1 expression and a rise in caspase 3 level. …”

Blockade of β₃AR completely restores attenuated HPV in IH rats. by Hisashi Nagai (650547)

“…The tungsten wire in the lower right corner of each image is a reference wire with a diameter of 50 μm. (B, C) Relationship between vessel size and the extent of the pulmonary vasoconstriction (% decrease in vessel diameter) induced in response to acute hypoxia in the N and IH rats treated with or without SR59230A. …”

Rheb overexpression defects are Tor-dependent. by Brian Dimitroff (185260)

“…(B) Measures of axon guidance misrouting showed a significant decrease in severity when <i>Tor</i> function was reduced by 50%. …”

Loss of photoreceptors between P10 and P21 in MKS3 mutant. by Sarika Tiwari (388798)

“…GCL, ganglion cell layer; INL, inner nuclear layer; ONL, outer nuclear layer; OS, outer segment; WT, wild type; M, mutant. ** unpaired t-test p>0.005. * unpaired t-test p>0.05. Scale bar: (A) 50 µm.</p>…”

Table 1_Sucrose reduction with maintained sweetness level lowers glycemic fluctuations and energy intake in healthy males.docx by Marlies Gaider (22551542)

“…</p>Methods<p>In a randomized crossover study with 32 healthy male participants, the effect of a 10% sucrose solution on blood glucose regulation and energy intake was compared to an equi-sweet 7% sucrose solution with 50 mg/L hesperetin. …”

Data Sheet 1_The fall and rise of Diopatra in Southern Brazilian sandy beaches.pdf by Paulo Cesar Paiva (8561472)

“…We modeled maximum density over time at 15 beaches, observing very high densities (>100 ind.m⁻²) in 1974 followed by a decrease (~10 ind.m⁻²) of three species of Diopatra until 1995 and a strong decline (1996–2002) when populations were almost regionally extinct (0–2ind.m⁻²). …”

DataSheet_1_Prognostic value of postoperative anti-thyroglobulin antibody in patients with differentiated thyroid cancer.xlsx by Yihan Zhao (9554633)

“…Purpose<p>Postoperative thyroglobulin (Tg) generally serves as a biomarker to monitor the recurrence or persistence of differentiated thyroid cancer (DTC), whereas it constrains to interference from anti-thyroglobulin antibody (TgAb). …”

Data_Sheet_1_Rhizospheric Bacillus spp. Rescues Plant Growth Under Salinity Stress via Regulating Gene Expression, Endogenous Hormones, and Antioxidant System of Oryza sativa L.DOC... by Muhammad Aaqil Khan (2591410)

“…Furthermore, a decrease in the endogenous abscisic acid (ABA) content (27.9–23%) and endogenous salicylic acid (SA) levels (11.70–69.19%) was observed in inoculated plants. …”

Data_Sheet_2_Rhizospheric Bacillus spp. Rescues Plant Growth Under Salinity Stress via Regulating Gene Expression, Endogenous Hormones, and Antioxidant System of Oryza sativa L.doc... by Muhammad Aaqil Khan (2591410)

“…Furthermore, a decrease in the endogenous abscisic acid (ABA) content (27.9–23%) and endogenous salicylic acid (SA) levels (11.70–69.19%) was observed in inoculated plants. …”

Data_Sheet_1_An automated heart rate-based algorithm for sleep stage classification: Validation using conventional polysomnography and an innovative wearable electrocardiogram devi... by Nicolò Pini (11370516)

“…However, most of the devices and algorithms lack extensive and independent validation, a fundamental step to ensure robustness, stability, and replicability of the results beyond the training and testing phases. …”

Data_Sheet_1_Platycodon grandiflorum exhibits anti-neuroinflammatory potential against beta-amyloid-induced toxicity in microglia cells.ZIP by Yun-Jeong Ji (19342306)

“…Mechanistically, PGW attenuated the activation of the MAPK (JNK, ERK, p38) pathway induced by Aβ, showing a concentration-dependent decrease in phosphorylation levels of these proteins. …”

Serum Biomarkers Reveal Long-term Cardiac Injury in Isoproterenol-treated African Green Monkeys by Yashu Liu (506892)

“…The serum concentration of SAA showed a ∼50 fold increase, while concentration of FBAA and fetuin A exhibited a significant decrease accompanying isoproterenol-induced cardiotoxicity. …”

Ni-Assisted Transformation of Graphene Flakes to Fullerenes by Irina V. Lebedeva (347621)

“…The Ni clusters are shown to reduce the activation energy for the graphene–fullerene transformation from 4.0 eV to 1.5–1.9 eV, providing the decrease of the minimal temperature at which such a transformation can be observed experimentally from about 1400 K for free graphene flakes to about 700–800 K. …”

3D reconstructions and raw images of neurons from NL at E13 and E17. by Matthew J. Korn (340248)

“…Scale bar = 15 <i>µ</i>m A–D and G–J; 30 <i>µ</i>m E and F; 50 <i>µ</i>m K and L. …”

Ni-Assisted Transformation of Graphene Flakes to Fullerenes by Irina V. Lebedeva (347621)

“…The Ni clusters are shown to reduce the activation energy for the graphene–fullerene transformation from 4.0 eV to 1.5–1.9 eV, providing the decrease of the minimal temperature at which such a transformation can be observed experimentally from about 1400 K for free graphene flakes to about 700–800 K. …”

Serum Biomarkers Reveal Long-term Cardiac Injury in Isoproterenol-treated African Green Monkeys by Yashu Liu (506892)

“…The serum concentration of SAA showed a ∼50 fold increase, while concentration of FBAA and fetuin A exhibited a significant decrease accompanying isoproterenol-induced cardiotoxicity. …”

Peak calcium induced by somatic BAP decays with distance in both experiments and model simulation. by David C. Sterratt (158383)

“…<p><b>A</b>, Two-photon compressed z-stack morphology of CA1 pyramidal neuron. …”

Ni-Assisted Transformation of Graphene Flakes to Fullerenes by Irina V. Lebedeva (347621)

“…The Ni clusters are shown to reduce the activation energy for the graphene–fullerene transformation from 4.0 eV to 1.5–1.9 eV, providing the decrease of the minimal temperature at which such a transformation can be observed experimentally from about 1400 K for free graphene flakes to about 700–800 K. …”

Ni-Assisted Transformation of Graphene Flakes to Fullerenes by Irina V. Lebedeva (347621)

“…The Ni clusters are shown to reduce the activation energy for the graphene–fullerene transformation from 4.0 eV to 1.5–1.9 eV, providing the decrease of the minimal temperature at which such a transformation can be observed experimentally from about 1400 K for free graphene flakes to about 700–800 K. …”