Key pathways with metabolic alterations in <i>pex</i> mutant flies. by Michael F. Wangler (544124)

“…Four analytes representing fatty dicarboxylates are shown with significant increases in the pex mutants over the corresponding rescue line for each mutation (see also <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1006825#pgen.1006825.s014" target="_blank">S1 Table</a>). …”

Thymocytes in γδ T cell-deficient mice. by Swati Popat Phalke (6876818)

“…Total thymocytes and thymic lymphocytes (identified by their scatter profile) were counted in the mouse strains of this study (same strains as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0218827#pone.0218827.g001" target="_blank">Fig 1</a>). …”

Summary of alterations in fundamental parameters of the mitochondrial respiratory chain in nematodes deficient in mitochondrial dynamics and homeostasis processes. by Anthony L. Luz (759927)

“…</p><p>**<i>isp-1</i> mitochondria could not be quantified, likely due to poor MitoTracker Red CMXROS uptake due to decreased mitochondrial membrane potential [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0130940#pone.0130940.ref059" target="_blank">59</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0130940#pone.0130940.ref060" target="_blank">60</a>].…”

Cell migration and invasion ability were inhibited by increasing concentrations of simvastatin. by Zhiqing Fang (280618)

Results of solely visual/haptic feedback experiment. by Xiaoxiao Cheng (13888603)

Table_1_Acidic urine is associated with poor prognosis in patients with bladder cancer undergoing radical cystectomy.docx by Jang Hee Han (11990840)

“…To eliminate confounding factors, we excluded patients diagnosed with non-urothelial cancer and end-stage renal disease.</p>Results<p>A total of 351 patients with a mean age of 69.8 ± 10.5 years and median follow-up of 16.0 months were eligible for the analysis. …”

Image_1_Acidic urine is associated with poor prognosis in patients with bladder cancer undergoing radical cystectomy.jpeg by Jang Hee Han (11990840)

“…To eliminate confounding factors, we excluded patients diagnosed with non-urothelial cancer and end-stage renal disease.</p>Results<p>A total of 351 patients with a mean age of 69.8 ± 10.5 years and median follow-up of 16.0 months were eligible for the analysis. …”

Development of the cell fitness multiplexing assay. by Daniel F. Gilbert (193637)

“…Luminescence signals (black) reach a maximum ten minutes after addition of CTG (see step 7 in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0028338#pone-0028338-g001" target="_blank">Fig. 1A</a>) followed by linear decrease. …”

Hexokinase 2 (Hxk2) is the main 2DG-phosphorylating enzyme <i>in vivo</i>. by Clotilde Laussel (13237429)

“…<p>(<b>A</b>) Intracellular 2DG6P was assayed enzymatically (see <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1010169#sec010" target="_blank">Methods</a>) in WT and <i>hxk2Δ</i> cells grown overnight in a glucose-containing medium and treated or not for 15 min with 0.2% 2DG. …”

Enhancer-promoter pairs in the context of other interactions. by Boryana Doyle (648763)

“…This coloring convention continues throughout the paper. (<b>B</b>) A recent study in Drosophila suggested a 7 kb chromatin loop formed between Su(Hw) insulators (orange) could decrease E-P interactions (red “X”) <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003867#pcbi.1003867-Savitskaya1" target="_blank">[20]</a>. …”

Trx deficiency triggers the DNA replication checkpoint. by Susanna Boronat (4166929)

“…(D) Total RNA prepared from untreated (-) or HU-treated (+) (180 min, 10 mM HU) YE cultures of strains 972 (WT), JA943 <i>(Δcds1)</i>, MJ15 <i>(Δtrx1)</i> and SG248 <i>(Δtrx1 Δtrx3)</i> was analyzed as in <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1006858#pgen.1006858.g003" target="_blank">Fig 3D</a> with probes for <i>cdc22</i> and <i>act1</i>, used as a loading control. …”

Knock-down of axonemal dyneins and classification of corresponding phenotypes. by Jörn Söhle (180871)

Metformin treatment reduces the mRNA levels of proinflammatory cytokines in human HT-29 cells. by Seon-Yeong Lee (403007)

Data_Sheet_1_Phenotypes and Baseline Risk Factors of Acute Kidney Injury in Children After Allogeneic Hematopoietic Stem Cell Transplantation.docx by Justinas Daraskevicius (9307817)

“…<p>Background: Acute kidney injury (AKI) is a frequent and widely recognized complication of allogeneic hematopoietic stem cell transplantation (allo-HSCT). …”

Metabolomic and chemogenomic profiling. by Wesley C. Van Voorhis (191219)

“…Six of seven compounds (indicated in red) reported to target <i>Pf</i>ATP4 [<a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1005763#ppat.1005763.ref025" target="_blank">25</a>] showed a distinct metabolic response characterized by the accumulation of dNTPs and a decrease in hemoglobin-derived peptides. …”

Acinar cell function during long-term culture of pancreas tissue slices. by Anja Marciniak (479504)

“…The relative amount of released amylase decreases with culture time. However, amylase release shows a typical bell-shaped curve response to increasing caerulein concentrations at all time points. …”

Simulation of mantling by one colony in an average territory over 100 years. by Walter R. Tschinkel (2765)

“…Regression equations for each depth category are given in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0120407#pone.0120407.t002" target="_blank">Table 2</a>, data in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0120407#pone.0120407.s007" target="_blank">S7</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0120407#pone.0120407.s008" target="_blank">S8</a> Tables. …”

Foxm1 is essential for lung tumor growth induced by MCA/BHT. by I-Ching Wang (348231)

“…<p>Experimental <i>epFoxm1^−/−</i> (<i><u>epFoxm1^fl/fl</u></i><u>+Dox</u>) and control <i>Foxm1^fl/fl</i> (<i><u>Foxm1^fl/fl</u></i><u>+Dox</u>) mice were given Dox in water to activate Cre expression either 4 weeks prior to or 1 week after tumor induction/promotion with MCA/BHT as described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0006609#s4" target="_blank">Materials and Methods</a>. …”

Model of cdr2 action in mitosis. by Kevin J. O'Donovan (250670)

“…<p>Cdr2 levels increase in G2, peak in mitosis and decrease as cells exit mitosis. Nuclear envelope breakdown in prometaphase allows newly synthesized cdr2 access to c-myc protein, which, like other transcription factors <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010045#pone.0010045-Delcuve1" target="_blank">[61]</a>, partitions itself off DNA during chromatin condensation, coinciding with mitotic shutdown of transcription. …”

Core of the method. by Kanaka Rajan (481577)

“…The stimuli are natural image clips which are pixel patches resized from a natural image database, as described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0071959#pone.0071959-Tkaik1" target="_blank">[36]</a>. spikes are generated with a probability per time bin of from the model neuron by a thresholding the term, where the matrix is the receptive field of the neuron. …”