Kinetics of H3K4 trimethylation and <i>Prdm9</i> expression in testes of prepuberal mice. by Corinne Grey (200646)

“…The fraction of chromatin bound to H3K4me3, normalized to STS1 (the 5′ most flanking STS), was determined along the <i>Psmb9</i> hotspot in whole testes from prepuberal R209 mice, as described previously <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001176#pbio.1001176-Buard2" target="_blank">[11]</a>. …”

IB2d <i>Tomopteris</i> Example by Nicholas Battista (20542367)

“…It that takes ~5 hours to run.</li></ul><p>-------------------------------------------------------------</p><h4> <b>README (1/28/2025)</b></h4><ul><li>Simulation by N.A. …”

File S1 - <i>Lactobacillus gasseri</i> SF1183 Affects Intestinal Epithelial Cell Survival and Growth by Blanda Di Luccia (407048)

“…Figure S4, enlargment of part of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0069102#pone-0069102-g005" target="_blank">Fig. 5</a> showing the output of the FACS analysis.…”

Reduced expression of the primitive endoderm markers Gata4 and Gata6 and increased expression of Nanog was observed in embryoid bodies following inhibitor of the Fgfr. by Gail Doughton (584818)

“…A dose dependent decrease in expression of both proteins was observed. …”

The noise profile in gene transcription homeostasis. by Qiwen Sun (6408368)

“…The noise strength Φ* takes large values but also shows insignificant variations except in Fig 5A.</p>…”

Energy landscapes of the model with and without descending loops. by Pantelis Leptourgos (9767840)

“…In the absence of external input, dots can only decrease. <b>(B.)</b> Schema illustrating how noise can force the state to climb an energy barrier (a hill in the energy landscape) and switch to a different stable state. …”

Blockade of β₃AR completely restores attenuated HPV in IH rats. by Hisashi Nagai (650547)

“…Images were recorded after 5 min exposure to A: normoxia, B: hypoxia (10% O_<b>2</b>), C: SR59230A + normoxia, and D: SR59230A + hypoxia in the same lung field. …”

Starvation Resistance upon FB-Specific modulation of dMyc, miR-305 and Dmp53. by María P. Gervé (16892378)

“…See also <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1010721#pgen.1010721.s005" target="_blank">S5 Fig</a>.…”

Age-induced reduction in spatially precise search strategies is correlated with levels of adult hippocampal neurogenesis. by Joana Gil-Mohapel (462002)

“…(D) Age resulted in a decrease in the combined use of spatially precise search strategies and a concomitant increase in the combined use of spatially imprecise search strategies. …”

Switching dynamics of <i>var</i> genes in the following generations after erasing the epigenetic memory are biased. by Yair Fastman (175460)

“…Differences between the first and the last time points were tested by chi-square distribution and had values of <i>P</i><0.05 (<b>B</b>), Comparison of overall transcript levels between the first 4 time points and the last 5 time points shows significant decrease in transcription levels of subtelomeric genes over time (<i>P = 0.005</i>; Mann-Whitney U test) (<b>C</b>), Analyzing the transcription data for underlying switch dynamics of each individual <i>var</i> gene over half a year after switching initiation demonstrates biased activation and silencing patterns. …”

The effectiveness of electrical intracochlear stimulation (EIS) on neurons of the anteroventral cochlear nucleus (AVCN). by Nicole Rosskothen-Kuhl (539300)

“…(E) Three days after sustained EIS a strong decrease in the number of Fos protein positive nuclei was observable. …”

Association between changes in miRNA 3′ nucleotide additions and changes in miRNA abundance. by Emily C. Knouf (434880)

“…Shading of a box indicates a t-test p-value <0.05 when comparing the abundance in miRNAs with unchanged versus increased or decreased 3′ addition. …”

AKMT is important for invasion and egress, but not for parasite replication. by Aoife T. Heaslip (207534)

“…<i>Left:</i> Percentage of vacuoles where egress had occurred 0, 2, 5, and 10 minutes after A23187 treatment. <i>Right:</i> Percentage of vacuoles that had been permeabilized 0, 2, 5, and 10 minutes after DMSO (dashed lines) or 5 µM A23187 (solid lines) treatment. …”

E-CAD levels and cellular localization are modified in fra mutants and in embryos without the DL gradient; related to Fig 4. by Yongqiang Xue (5481848)

“…<p>(A) Wild-type levels of E-CAD decrease sharply from dorsal to ventral regions of the embryo (black circles). …”

Conditional Smad7 Expression Alters Expression of Factors Important for Maintaining Adult β Cells by Nora G Smart (72089)

“…<div><p>Data are from tissues of male mice aged 4–5 mo.</p> <p>(A–C) Immunofluorescent detection of insulin⁺ β cells (green) and glucagon⁺ β cells (red) in wild-type, <i>Pdx1-tTA</i>, and bitransgenic <i>Pdx1-tTA/Smad7</i> mice. …”

Table_4_RNA-Seq and 16S rRNA Analysis Revealed the Effect of Deltamethrin on Channel Catfish in the Early Stage of Acute Exposure.xlsx by Yibin Yang (262311)

“…However, the toxicological mechanisms of Del on channel catfish remain unclear. In the present study, we exposed channel catfish to 0, 0.5, and 5 μg/L Del for 6 h, and analyzed the changes in histopathology, trunk kidney transcriptome, and intestinal microbiota composition. …”

Table_9_RNA-Seq and 16S rRNA Analysis Revealed the Effect of Deltamethrin on Channel Catfish in the Early Stage of Acute Exposure.xls by Yibin Yang (262311)

“…However, the toxicological mechanisms of Del on channel catfish remain unclear. In the present study, we exposed channel catfish to 0, 0.5, and 5 μg/L Del for 6 h, and analyzed the changes in histopathology, trunk kidney transcriptome, and intestinal microbiota composition. …”

Table_2_RNA-Seq and 16S rRNA Analysis Revealed the Effect of Deltamethrin on Channel Catfish in the Early Stage of Acute Exposure.xls by Yibin Yang (262311)

“…However, the toxicological mechanisms of Del on channel catfish remain unclear. In the present study, we exposed channel catfish to 0, 0.5, and 5 μg/L Del for 6 h, and analyzed the changes in histopathology, trunk kidney transcriptome, and intestinal microbiota composition. …”

Table_8_RNA-Seq and 16S rRNA Analysis Revealed the Effect of Deltamethrin on Channel Catfish in the Early Stage of Acute Exposure.xls by Yibin Yang (262311)

“…However, the toxicological mechanisms of Del on channel catfish remain unclear. In the present study, we exposed channel catfish to 0, 0.5, and 5 μg/L Del for 6 h, and analyzed the changes in histopathology, trunk kidney transcriptome, and intestinal microbiota composition. …”

Table_1_RNA-Seq and 16S rRNA Analysis Revealed the Effect of Deltamethrin on Channel Catfish in the Early Stage of Acute Exposure.xls by Yibin Yang (262311)

“…However, the toxicological mechanisms of Del on channel catfish remain unclear. In the present study, we exposed channel catfish to 0, 0.5, and 5 μg/L Del for 6 h, and analyzed the changes in histopathology, trunk kidney transcriptome, and intestinal microbiota composition. …”