The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum by William R. Harcombe (93324)

“…For ten populations that were evolved for 50,000 generations in glucose minimal medium, we observed modest changes in relative fluxes that led to small, but significant decreases in optimality and increased the distance to the predicted optimal flux distribution. …”

Table 2_Slavs in the closet: computational genomic analysis reveals cryptic slavic signatures in the Avar Khaganate and their contribution to medieval Croatian population formation... by Todor Chobanov (22288636)

“…Using a quality-controlled dataset of 1,800 ancient DNA samples, we implemented a comprehensive analytical framework centered on systematic screening of marginal Principal Components to detect cryptic Slavic genetic signatures. …”

Differences in Muscle and Adipose Tissue Gene Expression and Cardio-Metabolic Risk Factors in the Members of Physical Activity Discordant Twin Pairs by Tuija Leskinen (241764)

“…Our aim was to identify the most up-regulated gene sets related to long-term physical activity vs. inactivity in skeletal muscle and adipose tissues and to obtain further information about their link with cardio-metabolic risk factors. We studied ten same-sex twin pairs (age range 50–74 years) who had been discordant for leisure-time physical activity for 30 years. …”

Data_Sheet_1_Climate change-related warming-induced shifts in leaf chemical traits favor nutrition of the specialist herbivore Battus polydamas archidamas.docx by Marcia González-Teuber (304278)

“…We performed untargeted metabolomics analyses for estimating general changes in foliar metabolites between ambient control and warming-treated plants. …”

Table_2_De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression.pdf by Kira C. M. Neller (5170226)

“…We obtained 29,773 genes, 73% of which contained known protein domains, and identified several PAP isoforms. …”

Image 6_Slavs in the closet: computational genomic analysis reveals cryptic slavic signatures in the Avar Khaganate and their contribution to medieval Croatian population formation... by Todor Chobanov (22288636)

“…Using a quality-controlled dataset of 1,800 ancient DNA samples, we implemented a comprehensive analytical framework centered on systematic screening of marginal Principal Components to detect cryptic Slavic genetic signatures. …”

Targeted Deletion of the Metastasis-Associated Phosphatase <i>Ptp4a3</i> (PRL-3) Suppresses Murine Colon Cancer by Mark W. Zimmerman (395901)

“…Fewer homozygous-null males were observed at weaning, however, and they maintained a decreased body mass. Although <i>Ptp4a3</i> is normally associated with late-stage cancer and metastasis, we observed increased <i>Ptp4a3</i> expression in the colon of wildtype mice immediately following treatment with the carcinogen azoxymethane. …”

DataSheet_2_Transcriptomic Responses of Adult Versus Juvenile Atlantids to Ocean Acidification.xlsx by Paula Ramos-Silva (572049)

“…However, experimental limitations including short incubation times, one carboy used for each treatment and two replicates for transcriptome analysis, require us to be cautious about these conclusions. We show that distinct transcriptome profiles characterize the two life stages, with less than 50% of shared transcripts. …”

Image_1_Aberrant Expression of Cardiac Troponin-T in Lung Cancer Tissues in Association With Pathological Severity.TIF by Toshihiro Tsuruda (90244)

“…In addition, we examined whether TNNT2 gene is detected in lung cancer tissues of four patients using reverse transcription-polymerase chain reaction. …”

Supplementary Material for: Identification of Novel Transmembrane Proteins in Scirrhous-Type Gastric Cancer by the <b><i>Escherichia coli</i></b> Ampicillin Secretion Trap (CAST) M... by Oo H.Z. (4144027)

“…By sequencing 2,880 colonies from scirrhous CAST libraries, we identified a list of candidate genes. <b><i>Results:</i></b> We focused on the TM9SF3 gene because it has the highest clone count, and immunohistochemical analysis demonstrated that 46 (50%) of 91 GC cases were positive for TM9SF3, which was observed frequently in scirrhous-type GC. …”

Dataset for: Early life decline in neurogenesis markers and age-related changes of TrkB splice variant expression in the human subependymal zone by Christin Weissleder (4098235)

“…We further measured TrkB-TK+ and TrkB-TK- mRNAs in the SEZ from young adulthood into aging (n=50, 21-103 years), and related their transcript levels to neurogenic and glial cell markers. …”

Image 2_Slavs in the closet: computational genomic analysis reveals cryptic slavic signatures in the Avar Khaganate and their contribution to medieval Croatian population formation... by Todor Chobanov (22288636)

“…Using a quality-controlled dataset of 1,800 ancient DNA samples, we implemented a comprehensive analytical framework centered on systematic screening of marginal Principal Components to detect cryptic Slavic genetic signatures. …”

Quantitation of Aberrant BNO64 Gene Promoter Methylation in Breast Tumors by Anthony J Bais (13285305)

“…<p>The gene BNO64 has been previously found to be involved in chromosome translocations causing myeloid leukemia, The BNO64 gene maps in the 16q24.3 chromosome region known to be lost/deleted in 50% of breast cancers. We have recently found that this gene exhibits in vivo characteristics that are consistent with tumor suppressor activity. …”

Image_2_De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression.pdf by Kira C. M. Neller (5170226)

“…We obtained 29,773 genes, 73% of which contained known protein domains, and identified several PAP isoforms. …”

Table_1_De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression.pdf by Kira C. M. Neller (5170226)

“…We obtained 29,773 genes, 73% of which contained known protein domains, and identified several PAP isoforms. …”

<b>Species richness, composition and dominance of core and climate relicts of African Miombo woodlands</b> by Justice Muvengwi (22631075)

“…We sampled vegetation using modified Whittaker plots (50 m × 20 m) across four sites: core miombo woodland (n = 14), miombo edge (n = 19), Mozambique relict (n = 18), and South Africa relict (n = 21). …”

Transmission of reduced levels of miR-34/449 from sperm to preimplantation embryos is a key step in the transgenerational epigenetic inheritance of the effects of paternal chronic... by Alexandre Champroux (18547075)

“…We previously found that men exposed to early life trauma also display reduced sperm levels of miR-34/449. …”

Data_Sheet_1_The APSES Gene MrStuA Regulates Sporulation in Metarhizium robertsii.DOC by Wenjing Yang (466552)

“…In addition, transcription levels of two central regulators of asexual development, AbaA and WetA, were significantly reduced in the mutant; furthermore, the transcription levels of other sporulation related genes, such as Mpk, Phi, Med, Aco, Flu, and FlbD, also decreased significantly. We also show that the median lethal time (LT₅₀) of the mutant increased by 19%. …”

Data_Sheet_2_De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression.zip by Kira C. M. Neller (5170226)

“…We obtained 29,773 genes, 73% of which contained known protein domains, and identified several PAP isoforms. …”

Risk of Melanoma in People with HIV/AIDS in the Pre- and Post-HAART Eras: A Systematic Review and Meta-Analysis of Cohort Studies by Catherine M. Olsen (553145)

“…Whether melanoma risk has also changed in HIV/AIDS patients post-HAART is unknown and therefore we evaluated this in comparison with the risk before HAART.…”