Table_1_Benchmarking the Human Leukocyte Antigen Typing Performance of Three Assays and Seven Next-Generation Sequencing-Based Algorithms.xlsx by Ping Liu (156158)

“…Thus, we recommend using HISAT-genotype and HLA-HD for NGS-based HLA genotyping because of their higher accuracy and robustness to read length. We propose that a minimal sequence depth for obtaining more than 90% HLA typing accuracy at the third field level is 100X. …”

Image_4_Dual Roles of OsGH3.2 in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.JPEG by Cheng-Chen Liu (12398497)

“…Unlike SlGH3.4, OsGH3.2 showed asymbiotic expression in rice young lateral roots, and its mutation resulted in a “shallow” root architecture. Such root morphological change was also observed under symbiotic condition and it likely promoted AM fungal colonization, as the mutants exhibited higher colonization levels and arbuscule incidence than wild-type at early stages. …”

Table_1_Transcriptomic analysis shows that surgical treatment is likely to influence the endometrial receptivity of patients with stage III/IV endometriosis.xlsx by Rui Xiang (2168095)

“…Background<p>Endometriosis negatively affects fertility, and it is a common disease in assisted reproductive practice. …”

Table_1_Gut microbiome and mycobiome in inflammatory bowel disease patients with Clostridioides difficile infection.docx by Si Yu (3828445)

“…Background<p>Clostridium difficile infection (CDI) is common in patients with inflammatory bowel disease (IBD) and has been reported as a risk factor for poor outcome. However, gut microbiome and mycobiome of IBD patients with CDI have been barely investigated. …”

Xanthine Oxidase-Derived ROS Upregulate Egr-1 via ERK1/2 in PA Smooth Muscle Cells; Model to Test Impact of Extracellular ROS in Chronic Hypoxia by Tanya Hartney (15297)

“…Furthermore, we established in mice a correlation between hypoxic induction of Egr-1 and reduced activity of extracellular superoxide dismutase (EC-SOD), an antioxidant that scavenges extracellular superoxide. …”

DataSheet_4_Variation in Plasma Levels of TRAF2 Protein During Development of Squamous Cell Carcinoma of the Oral Tongue.pdf by Xiaolian Gu (3497087)

“…Variation in protein levels during cancer development poses a challenge for the identification of biomarkers that could predict SCCOT development.…”

Complex Behavior of Phosphatidylcholine–Phosphatidic Acid Bilayers and Monolayers: Effect of Acyl Chain Unsaturation by Waldemar Kulig (818101)

“…In addition, depending on the combination of lipids, we observed a deeper location of the PA phosphate groups compared to the PC phosphate groups, which can alter the presentation of PAs for the peripheral membrane proteins, affecting their accessibility for binding.…”

Data_Sheet_1_Cyclooxygenase-2 Inhibition Reduces Autophagy of Macrophages Enhancing Extraintestinal Pathogenic Escherichia coli Infection.docx by Haiyan Ren (111279)

“…Although the virulence factors and host immune responses to ExPEC infection have been investigated, the responses to a particular ExPEC strain could be very different. …”

Pyramidal Stability of 16-Electron Half-Sandwich Intermediates [CpRu(P−P)]⁺ with P−P Ligands Forming Four- to Six-Membered Chelate Rings by Henri Brunner (1621222)

DataSheet_1_Effects of artificial light at night and drought on the photosynthesis and physiological traits of two urban plants.docx by Yaxi Wei (16879044)

“…<p>Urban plants are currently confronted with the stresses posed by artificial light at night (ALAN) and drought. A field block experiment was designed to explore the potential effects of ALAN and drought on the photosynthesis and physiological characters of two common urban plants, Euonymus japonicus (E. japonicus) and Rosa hybrida (R. hybrida). …”

Striking image. by Chunhua Yang (346871)

“…<div><p>This study proposes the S-YOLOv10-ASI algorithm to improve the accuracy of tea identification and harvesting by robots, integrating a slice-assisted super-reasoning technique. The algorithm improves the partial structure of the YOLOv10 network through space-to-depth convolution. …”

Table 4_Proteome changes during in vitro culture adaptation of Toxoplasma gondii archetypal II and III field isolates.xlsx by Joachim Müller (265589)

“…Interestingly, differentially abundant proteins were clearly linked to phenotypic changes associated to in vitro adaptation: loss of ability to spontaneously form cysts at high passages and decreased expression of cyst and bradyzoite markers (BAG1, Enolase 1, and SRS35A), while culture adaptation was associated with increased abundance of recognized virulence factors such as GRA15, GRA16, TEEGR and NSM.…”

Psoriasis DEMs are associated with regulatory axes connecting cytokine signals to transcription factors (STAT1, E2F, RUNX1 and NF-κB) and the SETDB1 histone methyltransferase. by William R. Swindell (175427)

“…The <i>Z</i> statistic quantifies the degree of motif enrichment, based upon a comparison of motif frequency in intergenic regions near DEM genes versus frequency in all other intergenic regions associated with epidermis-expressed genes (semiparametric generalized additive logistic model; see Methods). …”

Image_2_Landscape Topography and Regional Drought Alters Dust Microbiomes in the Sierra Nevada of California.TIFF by Mia R. Maltz (4446295)

“…In addition to nutrient inputs, incoming dust is a vector for dispersing dust-associated microorganisms. …”

Image_2_Alterations of Gut Microbiome and Metabolite Profiles Associated With Anabatic Lipid Dysmetabolism in Thyroid Cancer.tif by Ganghua Lu (12750878)

“…LEfSe analysis demonstrated that genera (g_Christensenellaceae_R-7_group, g_Eubacterium_coprostanoligenes_group) and metabolites [27-hydroxycholesterol (27HC), cholesterol] closely related to lipid metabolism were greatly reduced in the TC group. In addition, a clinical serum indicator (total cholesterol) and metabolites (27HC and cholesterol) had the strongest influence on the sample distribution. …”

Table_3_Gut microbiome and mycobiome in inflammatory bowel disease patients with Clostridioides difficile infection.xlsx by Si Yu (3828445)

“…Background<p>Clostridium difficile infection (CDI) is common in patients with inflammatory bowel disease (IBD) and has been reported as a risk factor for poor outcome. However, gut microbiome and mycobiome of IBD patients with CDI have been barely investigated. …”

Endothelial Depletion of Acvrl1 in Mice Leads to Arteriovenous Malformations Associated with Reduced Endoglin Expression by Simon Tual-Chalot (152620)

“…Hereditary Haemorrhagic Telangiectasia is a familial disease of this type. The majority of patients carry mutations in either Endoglin (<i>ENG</i>) or <i>ACVRL1</i> (also known as <i>ALK1</i>) genes, and the disease is characterized by arteriovenous malformations and persistent haemorrhage. …”

Pyramidal Stability of 16-Electron Half-Sandwich Intermediates [CpRu(P−P)]⁺ with P−P Ligands Forming Four- to Six-Membered Chelate Rings by Henri Brunner (1621222)

Image_3_Dual Roles of OsGH3.2 in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.JPEG by Cheng-Chen Liu (12398497)

“…Unlike SlGH3.4, OsGH3.2 showed asymbiotic expression in rice young lateral roots, and its mutation resulted in a “shallow” root architecture. Such root morphological change was also observed under symbiotic condition and it likely promoted AM fungal colonization, as the mutants exhibited higher colonization levels and arbuscule incidence than wild-type at early stages. …”

Image 5_Proteome changes during in vitro culture adaptation of Toxoplasma gondii archetypal II and III field isolates.tif by Joachim Müller (265589)

“…Interestingly, differentially abundant proteins were clearly linked to phenotypic changes associated to in vitro adaptation: loss of ability to spontaneously form cysts at high passages and decreased expression of cyst and bradyzoite markers (BAG1, Enolase 1, and SRS35A), while culture adaptation was associated with increased abundance of recognized virulence factors such as GRA15, GRA16, TEEGR and NSM.…”