Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale by Douglas McCloskey (1430353)

“…The majority of work using MFA has been limited to core models of metabolism due to challenges in implementing genome-scale MFA and the undesirable trade-off between increased scope and decreased precision in flux estimations. This work presents a tunable workflow for expanding the scope of MFA to the genome-scale without trade-offs in flux precision. …”

Table_4_PRDX6: A protein bridging S-palmitoylation and diabetic neuropathy.xlsx by Yan Cao (482880)

“…S-palmitoylation is a reversible posttranslational lipid modification, and its dysregulation has been implicated in metabolic syndrome, cancers, neurological disorders, and infections. …”

Single-Cell Sequencing Reveals Heterogeneity Effects of Bisphenol A on Zebrafish Embryonic Development by Ling Chen (25698)

“…Moreover, BPA also changed transforming growth factor (TGF) β signaling and heart tube morphogenesis in heart cells, leading to a decreased heartbeat in zebrafish larvae. Our study provides a comprehensive understanding of BPA toxicity on fish embryonic development at a single-cell level.…”

DNA Metabarcoding Unveils a Decade of Dietary Shifts in Prey Fishes of an Estuarine Dolphin by Jianqing Lin (19361335)

“…Furthermore, PERMANOVA confirmed significant temporal dietary divergence (P<0.05), with intensified niche partitioning between C. lucida and the other species, while dietary overlap between C. thrissa and K. punctatus decreased from 62% (2013) to 28% (2023). Additionally, phytoplankton, the foundation of the trophic pyramid, experienced a 20% decline in species richness, potentially triggering bottom-up effects that threaten the food availability of apex predators. …”

Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale by Douglas McCloskey (1430353)

“…The majority of work using MFA has been limited to core models of metabolism due to challenges in implementing genome-scale MFA and the undesirable trade-off between increased scope and decreased precision in flux estimations. This work presents a tunable workflow for expanding the scope of MFA to the genome-scale without trade-offs in flux precision. …”

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data by Lauren M. Bragg (401714)

“…<div><p>The Ion Torrent Personal Genome Machine (PGM) is a new sequencing platform that substantially differs from other sequencing technologies by measuring pH rather than light to detect polymerisation events. …”

Effects of Varied Housing Density on a Hybrid Mouse Strain Followed for 20 Months by Beverly Paigen (18314)

“…While previous studies have investigated physiological effects of increased housing density using inbred mouse strains, including C57BL/6J and 129S1/SvImJ, this study tested an F1 hybrid population of C57BL/6J x 129S1/SvImJ for changes resulting from either decreased or increased housing density. Mice were followed until they were 20 months old, a substantially longer duration than has been used in previous density studies. …”

<i>fadH</i> expression depends on fruit ripeness and a specific metabolite. by Jason T. Noel (242756)

“…An upward white arrow at the bottom of each bar indicates that the metabolite increases as tomato matures, a downward arrow indicates that the metabolite decreases with the maturity of the fruit <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0012406#pone.0012406-Carrari1" target="_blank">[11]</a>. …”

Inactivation of Topo IV leads to a specific inability to replicate the terminus region of the chromosome. by Parisa D. Mokhtari (22209097)

“…However, inactivation of Topo IV (in <i><i>parE</i></i>^ts mutants) prevents the completion of ongoing replication events, leading to a loss of sequence reads in the terminus region and an inability to maintain the region of the chromosome where forks converge. …”

Social media and colorectal cancer: A systematic review of available resources - Fig 4 by Gianluca Pellino (3813835)

“…<p><b>Comparison of the performance of the hashtag <i>#rectalcancer</i> in two different 6-month time-frames: July 2015 –December 2015 (4A) and January 2016 –July 2016 (4B).</b> Even for this hashtag the number of tweets increased (+200), but the overall impressions slightly decreased (-560000). …”

Stress Relaxation Analysis Facilitates a Quantitative Approach towards Antimicrobial Penetration into Biofilms by Yan He (116705)

“…Moreover, biofilms are often tolerant to antimicrobials, due to a combination of inherent properties of bacteria in their adhering, biofilm mode of growth and poor physical penetration of antimicrobials through biofilms. …”

Spread of a New Parasitic B Chromosome Variant Is Facilitated by High Gene Flow by María Inmaculada Manrique-Poyato (387444)

“…For six years we analyzed B frequency in several populations to the east and west of the original population and found extensive spatial variation, but only a slight temporal trend. The highest B₂₄ frequency was found in its original population (Torrox) and it decreased closer to both the eastern and the western populations. …”

Supplementary Material for: The power of a good word: Enhancing the efficacy of analgesics in clinical settings by Treister R. (19801920)

Data for Effects of habitat structure and individual variation in a simulated acoustic communication network by Redacted During Review of Paper (14603434)

“…In general, increasing vegetation levels led to decreased network connectivity and greater network modularity, but in a few cases network connectivity actually increased because it reduced high levels of background noise. …”

Table2_Correlates of physical activity habits in adolescents: A systematic review.docx by Tianyi Shao (12485027)

“…Our systematic review indicated the following: 1) boys performed more physical activity habits than girls, whereas girls preferred to engage in moderate-to-vigorous physical activity; 2) physical activity in adolescents decreased with age; 3) African American adolescents performed significantly more habitual physical activities than white adolescents; 4) adolescents with higher literacy had better physical activity habits; 5) support from parents, teachers, friends, and others helped adolescents in developing physical activity habits; 6) adolescents who spent less time participating in habitual physical activity had a higher body mass index; 7) adolescents who reported higher levels of self-efficacy and satisfaction with school sports tended to have stronger physical activity habits; 8) sedentary behavior, smoking, drinking, prolonged screen time, negative emotions, and excessive use of media technology were correlated with reduced habitual physical activity in adolescents. …”

Single-Cell Sequencing Reveals Heterogeneity Effects of Bisphenol A on Zebrafish Embryonic Development by Ling Chen (25698)

“…Moreover, BPA also changed transforming growth factor (TGF) β signaling and heart tube morphogenesis in heart cells, leading to a decreased heartbeat in zebrafish larvae. Our study provides a comprehensive understanding of BPA toxicity on fish embryonic development at a single-cell level.…”

Phosphorus accumulation in a southern Brazilian Ultisol amended with pig manure for nine years by Tales Tiecher (4630222)

“…<div><p>ABSTRACT: This study evaluated P pools after nine years of successive application of either pig slurry (PS) or deep pig litter (DL) in a no-till Ultisol from southern Brazil. The experiment was established in Dec 2002 with the treatments control, application of 90 and 180 kg N ha−1 N as PS and as DL. …”

Understanding the Spectroscopic Properties and Aggregation Process of a New Emitting Boron Dipyrromethene (BODIPY) by Thanh Truc Vu (1981696)

“…The results also indicated a concentration frontier: when the dye concentration increased up to 0.29 mol·L^–1, the concentration of M decreased in favor of the aggregates. …”

Pancreatic Differentiation of Stem Cells Reveals Pathogenesis of a Syndrome of Ketosis-Prone Diabetes by Diane Yang (11198946)

“…Genetic analysis of an adult patient with an unusual course of Ketosis-Prone Diabetes (KPD) and lacking islet autoantibodies demonstrated a nucleotide variant in the<i> </i>5’-UTR of <i>PDX1</i>, a beta-cell development gene. …”

A Structural Equation Model Analysis of Relationships among ENSO, Seasonal Descriptors and Wildfires by Matthew G. Slocum (462433)

“…In this manuscript we used structural equation modeling (SEM) to analyze a proposed causal network describing seasonality of rainfall for a site in south-central Florida. …”