Data_Sheet_1_Determination of factors associated with serum cholesterol response to dairy fat consumption in overweight adults: Secondary analysis from an RCT.docx by Aileen O'Connor (13191693)

“…For TC and LDL-c, response was classified as a decrease, whereas “response” was defined as an increase for HDL-c. …”

I-Mutant results for selected nsSNPs in the TRIM22 protein. by Jenna N. Kelly (591069)

“…  =  number of deleterious predictions; nsSNPs with 4 or more deleterious predictions are considered high-risk nsSNPs, while nsSNPs with less than 4 deleterious predictions are considered low-risk; DDG: free energy change value in Kcal/mol (>0 increase, <0 decrease, >0.5 large increase, <−0.5 large decrease); Sign of DDG: the direction of the change (increase or decrease); The reliability index (RI) from 0–9 is shown in parentheses, where 0 is the lowest RI and 9 is the highest); PTM: predicted post-translational modification site; ConSurf results are shown in the last column (number represents the conservation score (CS) from 1–9, letter represents whether the residue was predicted to be exposed (e) or buried (b), putative functional residues are indicated with bold text; whereas putative structural residues are indicated with italicized text (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0101436#pone.0101436.s001" target="_blank">Figure S1</a>); Sites with an additional ConSurf result in parentheses are located next to putative functional (9e) or structural (9b) residues; nsSNPs with the largest predicted stability decreases (DDG <−1.0) that also have a RI score of ≥5 are indicated with an asterisk.…”

Population sorting II. by Xavier Manière (230820)

“…As expected, population with similar dynamics and intra population variability of velocities (larger µ) decrease the sorting efficiency. (C) Using the experimental data displayed on <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0016637#pone-0016637-g003" target="_blank">Fig. 3</a> we computed the distribution of worms position at time τ = 100s. …”

Differences in multi-scale complexity between conditions. by Thomas F. Varley (8446899)

“…While the ketamine condition (grey) was associated with a noticable decrease in complexity compared the awake condition (purple), it was a much smaller decrease than what was observed in the propofol condition, which was an order of magnitude less complex. …”

Estimated changes in the frequency resulting from changes in slopes and amplitude agree with simulations. by Daisuke Ohshima (129662)

“…<p>(A) Slope+ and slope- were larger given a 16-fold increase in <i>k</i>_<i>1</i>, while there was virtually no change in the slopes following a 16-fold increase or a 1/7.4-fold decrease in <i>k</i>_<i>2</i> or <i>k</i>_<i>3</i>. …”

Judicialization of medicines in the State of Rio de Janeiro: development from 2010 to 2017 by Letícia de Oliveira Peçanha (10395481)

“…The largest increase in the number of lawsuits was observed in the municipalities of the group Small Size I (158.1%) and a decrease of 10.2% in the Medium-sized municipalities. …”

Efficiency of nitrogen fixation. by Hironori Fujita (226867)

“…<p>The efficiency of nitrogen fixation (<i>x_eff</i>) decreases with increasing cost <i>c</i>. <b>(A)</b> This decrease is continuous for a linear cost function (<i>c_N</i> = 0). …”

Changes of axon number and diameter between <i>C6ST</i>-1 KO and normal mice after PNS injury. by Rachel Lin (215087)

“…<p>(a) Number of median nerve axons is just above 1500 in uninjured animals. …”

Effect of large clustering strength on SSA activity. by Michael T. Schaub (331194)

“…<p><b>A</b> Large values of the clustering <i>R</i>_<i>EE</i> lead to linear instability of the SSA dynamics and localization of the activity on one assembly. …”

Relationships between environmental conditions and performance of Melampyrum sylvaticum by Sarah E. Dalrymple (382515)

“…Interpretation of the relationship might suggest that there is a decrease in M. sylvaticum performance with increasing vigour of the herbaceous species. …”

Functional annotation of genes involved in proliferation and/or neurogenesis. by Rupert W. Overall (122762)

“…<p>Genes annotated as up- (P+) or downregulating (P−) proliferation of precursor cells, or increasing (N+) or decreasing (N−) neurogenesis (numbers of new neurons) are shown as a Venn diagram. …”

KIR specificity is protective against viruses evolving MHC-like decoys. by Paola Carrillo-Bustamante (469426)

“…(A) The MHC down-regulating virus (red line) is fitter than the wild type virus (blue line), infecting more individuals and resulting in a larger decrease of the total population size (grey line). …”

Data_Sheet_1_Effect of Three Pesticides Used in Salmon Farming on Ammonium Uptake in Central-Southern and Northern Patagonia, Chile.docx by Valentina Valdés-Castro (10029185)

“…Emamectin benzoate produced a 36 to 77% decrease in chemo and photoautotrophic ammonium uptake, respectively. …”

Simulated and estimated branch-specific changes. by Randi H. Griffin (839014)

“…Larger variances of PIDC estimates are found on shorter branches (B), e.g., the two largest variances occur on branches 68 and 215, which both have branch lengths of 0.01. …”

Average confusion matrix, for 100 iterations of the evaluation process, reporting the classification rates of the individual signatures in the best configuration (the ensemble clas... by Vincent Arnaud (6111599)

“…<p>Individuals are sorted from bottom to top by decreasing the number of calls (Jill: largest number; Busira: lowest number). …”

Comparison of substrate metabolism in brown and white preadipocytes and adipocytes. by Barry R. Bochner (226699)

“…<p>Normalized optical-density scores representing nutrient metabolism, showing the greatest differences between white fat (top) and brown fat (bottom) cells in either an undifferentiated (gray bars) or differentiated (black bars) state. Included are a) wells that cause no change (1, negative control), b) nutrients that are high in brown preadipocytes and decrease upon differentiation (2, α-D-glucose-1-phosphate; 3, D-glucose-6-phosphate; 4, D-fructose-6-phosphate; 5, glycogen), c) a similarly behaved nutrient that is high in white fat (6, hexanoic acid), d) nutrients that decrease during differentiation of both cell types (7, dextrin; 8, butyric acid), and e) nutrients that increase upon white fat differentiation (9, L-leucine; 10, Leu-Leu; 11, succinamic acid, 12. acetoacetic acid). …”

Input Filter 5–10Hz. by Elías M. Fernández Santoro (22470299)

“…In general, IO spikes for The NF case seem to derive from entrainment followed by a final larger decrease in PSC. For 5–10 Hz filter, IO spikes seem to derive purely from entrainment to the oscillatory signal, with also a much clearer (larger amplitude) template before the spike.…”

Thalamocortical loop in motor signal processing. by Rahul Agarwal (143303)

“…In contrast, in PD case with HFDBS applied, is larger and the gains decrease, which generates a smaller orbit tube. …”

XpYp telomere end distributions in single telomere length analysis (STELA) (6 lanes/sample). by Ulrika Svenson (285527)

“…The telomere distribution in the samples from Donor 5, showing a considerable decrease in heterogeneity and a loss of the largest telomeres.…”

The effect of novel synthetic communities on plant shoot Pi content can be predicted by an NN. by Sur Herrera Paredes (674875)

“…−NS, nonsignificant decrease; −S, significant decrease; +NS, nonsignificant increase; +S, significant increase; INT, linear model with interaction; leakyReLU, leaky Rectified Linear Unit; LM, linear model; NN, neural network; Pi, phosphate.…”