Posterior predictive checks using simulated marker expression data. by Christiaan H. van Dorp (9449599)

“…The marker expression data (simulated or real) is first mapped to the latent space using the trained VAE model. Then, a UMAP model is trained on the combined true data. …”

Effects of confinement on the overall folding behavior of budding yeast genome. by Gamze Gürsoy (4245571)

“…<p><b>(A)</b> Overall correlation coefficient of the frequencies between genome-wide 3C measurements and modeled ensemble. …”

Area V1 responses to illusory corner-folds in Vasarely’s nested squares and the Alternating Brightness Star illusions by Susana Martinez-Conde (389218)

“…<div><p>Vasarely’s nested squares illusion shows that the corners of concentric squares, arranged in a gradient of increasing or decreasing luminance, generate illusory “corner-folds,” which appear more salient (either brighter or darker) than the adjacent flat (non- corner) regions of each individual square. …”

Supplementary Material for: Volitional Yoga Breathing Influences Attention and Anxiety: An Exploratory Randomized Crossover Study by Sharma S.K. (11713172)

“…Also, a significant main effect of states on STAI-s scores was observed (<i>F</i>_1,407 = 33.979, <i>p</i> < 0.001), with a significant decrease in scores following alternate nostril yoga breathing (<i>p</i>_<i>adj</i> = 0.001), bellows yoga breathing (<i>p</i>_<i>adj</i> = 0.008), bumblebee yoga breathing (<i>p</i>_<i>adj</i> = 0.002), and high-frequency yoga breathing (<i>p</i>_<i>adj</i> = 0.042) compared to the corresponding pre state. …”

In vitro experiments yielded inconclusive results for predicting in vivo metastatic potential of L1CAM knockdown melanoma cells. by Ann-Kathrin Ernst (4846645)

“…All values of P are derived from linear models. If P_{Group X Line} is below 0.05 (i.e. if L1CAM knockdown displays different effects for cells from the two lines), a separate P<sub>Luc vs. …”

Epileptiform activity induces opposite changes in the RRP and P_rel. by Carlo Natale Giuseppe Giachello (380180)

“…The linear part was fitted as described in Methods. (C) Following PTZ exposure, the estimated RRP size, expressed in mV, significantly decreased soon after washout, recovered at 15 minutes and then increased 30 minutes post-treatment. …”

Electrical Pacing of Cardiac Tissue Including Potassium Inward Rectification by Suran Galappaththige (752087)

“…For cathodal currents the virtual anode produces a hyperpolarization that decreases over time. For long duration pulses the current-voltage curve is non-linear, with very small hyperpolarization compared to depolarization. …”

Dissociation of the gamma rhythm and high-gamma activity by manipulating stimulus size. by Supratim Ray (224895)

“…The gamma rhythm at ∼50 Hz increases with size, while the high-gamma activity above the gamma band decreases with size. (C) The LFP energy between 200 and 400 ms (denoted by a thick black line on the abscissa in B) as a function of frequency for the six sizes, whose radii are listed in the legend. …”

ASXL1 Circular Isoforms. by Winston Koh (3219246)

“…In addition, a second RNAse R resistant isoform was detected in the circular PCR that was confirmed to contain an unannotated exon in intron 3 (exon 3*) by Sanger sequencing C) Quantitation of RNAse R resistance by qPCR showing increased Ct for both linear isoforms after RNAse R treatment but a decreased Ct for the circular isoform D) PCR between exons 1 and 4 for short or long isoforms detect the expected band that corresponds to exons 1 through 4 (green arrow). …”

Edge effect model fit for forest specialists in the understory. by Natalie Yoh (9075092)

“…Standard error provided for the linear model. Model parameters listed in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0274637#pone.0274637.s002" target="_blank">S2 Table</a>.…”

Analysis of EGFP expressing mouse ES cells 24 by Steven Y. Gao (300438)

“…(<b>C</b>) The relationship between EGFP expression per cell and number of genes within constructs. An inverse linear relationship between the number of genes contained within each vector and the mean EGFP expression levels per positive cell was observed, within an increased number of genes associated with decreased EGFP expression levels. …”

Impact velocity and bruising analysis of potato tubers under pendulum impact test by Shengshi Xie (7233809)

“…It was verified that bruise volume and maximum velocity significantly increased with increasing initial height, while its minimum velocity and time of reaching the maximum velocity decreased during the same impact process. With increment of tuber mass, its impact velocities and time of reaching the maximum velocity presented linear change, but the bruise volume nonlinearly changed. …”

Characterization of the most polyphenic traits. by Doriane Muller (7878488)

“…<p>(A) The first two Linear Discriminants (LD1 and LD2) from the Linear Discriminant Analysis of the polyphenic, wing morphological traits (hv5, hv2, and fv2 areas, and jct, each divided by wing size) and the visual sexually-selected traits (fd5 area divided by wing size and fd5 relative brightness) in both sexes across developmental temperatures (square: 17°C, disk: 21°C, triangle: 23°C, diamond: 27°C combined with decreasing darkness). …”

Assessment of risk factors for severe cholera among rural children <5-years-old in Matlab, Bangladesh, 2000–2008. by Danny V. Colombara (287920)

“…</p>c<p>Linear trend for decreasing risk with increasing maternal education in the univariate and multivariate models (P<0.001).…”

OAT sensitivity analysis of model parameters using as the base-case data from Figure 5. by Sílvio B. Santos (602416)

“…<i>µ_max</i>: maximum rate of exponential growth, <i>K_s</i>: half-saturation constant, <i>α</i>: substrate needed for a new bacterium, <i>β</i>: burst size, <i>τ</i>: the latent period, <i>ρ</i>: rise period, <i>λ</i>: lambda parameter used in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0102507#pone.0102507.e037" target="_blank">equation 15</a>, <i>δ_r</i>: experimental determined adsorption rate, <i>mS_r</i>: bacterial growth rate at which the adsorption rate was calculated, The x- and y-axis are the same as <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0102507#pone-0102507-g005" target="_blank">Figure 5</a> (x: time [1 8] hours, y_Substrate: [0 5000]; y_Bacteria: [10⁷ 10¹⁰]; y_Phage: [10⁵ 10¹²]).…”

DataSheet_1_Rapid changes in heatwaves pose dual challenge in Eastern China and its adjacent seas.pdf by Yulong Yao (9458081)

“…Heatwaves in turn can release substantial ocean latent heat. Enhanced convection and heating will further drive a stronger anticyclone over the western North Pacific, leading to a stronger and more westward-extending western North Pacific subtropical high (WNPSH). …”

DataSheet_1_Rapid changes in heatwaves pose dual challenge in Eastern China and its adjacent seas.pdf by Yulong Yao (9458081)

“…Heatwaves in turn can release substantial ocean latent heat. Enhanced convection and heating will further drive a stronger anticyclone over the western North Pacific, leading to a stronger and more westward-extending western North Pacific subtropical high (WNPSH). …”

Biomarkers of Inflammation, Immunosuppression and Stress Are Revealed by Metabolomic Profiling of Tuberculosis Patients by January Weiner 3rd (149298)

“…Metabolic profiles indicate increased activity of indoleamine 2,3 dioxygenase 1 (IDO1), decreased phospholipase activity, increased abundance of adenosine metabolism products, as well as indicators of fibrotic lesions in active disease as compared to latent infection. …”

DataSheet_1_Including Volume Effects in Biological Treatment Plan Optimization for Carbon Ion Therapy: Generalized Equivalent Uniform Dose-Based Objective in TRiP98.pdf by Marco Battestini (12268814)

“…In particular, for a plan containing multiple OARs, we obtained the same target coverage and similar DVHs for OARs with a small volume effect while decreasing the mean dose received by the proximal parotid, thus reducing its NTCP by a factor of 2.5. …”

Relating the biophysical forces that govern bacterial adhesion to experimental data. by Mikkel Anbo (15287803)

“…The adhesion of PA14ΔO+O4 and PA14ΔO+O12 was assayed at pH 5, 7, and 9 in the absence (left) and presence (right) of the metal chelator 1mM EDTA. Linear models of adhesion as a function of pH were made for both strains and shown as a line, for PA14ΔO+O12, or a dashed line, for PA14ΔO+O4. …”