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process optimization » model optimization (Expand Search)
design optimization » bayesian optimization (Expand Search)
virus design » virus designs (Expand Search), virus designed (Expand Search), virus den (Expand Search)
wave process » same process (Expand Search), whole process (Expand Search), phase process (Expand Search)
binary wave » binary image (Expand Search)
a virus » b virus (Expand Search), c virus (Expand Search), 2 virus (Expand Search)
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A high-performance and highly reusable fast multipole method library and its application to solvation energy calculations at virus-scale
Published 2022“…We created a high-level Python interface with a modest effort due to a straightforward and standard software design. …”
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MCLP_quantum_annealer_V0.5
Published 2025“…Theoretical and applied experiments are conducted using four solvers: QBSolv, D-Wave Hybrid binary quadratic model 2, D-Wave Advantage system 4.1, and Gurobi. …”
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Data_Sheet_1_Strategies targeting hemagglutinin cocktail as a potential universal influenza vaccine.ZIP
Published 2022“…In this study, we optimized the HA sequences of human seasonal influenza viruses (H1N1, H3N2, Victoria, and Yamagata) by designing multivalent vaccine antigen sets using a mosaic vaccine design strategy and genetic algorithms, and designed an HA mosaic cocktail containing the most potential CTL epitopes of seasonal influenza viruses. …”
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Data_Sheet_3_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen...
Published 2021“…Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …”
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Data_Sheet_4_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen...
Published 2021“…Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …”
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Data_Sheet_2_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen...
Published 2021“…Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …”
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Data_Sheet_1_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen...
Published 2021“…Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …”
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Data_Sheet_6_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen...
Published 2021“…Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …”
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Data_Sheet_5_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen...
Published 2021“…Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …”
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Biochemistry-informed design selects potent siRNAs against SARS-CoV-2
Published 2023“…While previous siRNA design algorithms tended to rely on simplistic strategies (raising fully complementary siRNAs against targets of interest), our approach uses the most up-to-date mechanistic description of RNAi to allow mismatches at tolerable positions and to force them at beneficial positions, while optimizing siRNA duplex asymmetry. …”
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Data_Sheet_1_Phase-wise evaluation and optimization of non-pharmaceutical interventions to contain the COVID-19 pandemic in the U.S..pdf
Published 2023“…We further assess the effectiveness of existing COVID-19 control measures and explore potential optimal strategies that strike a balance between public health and socio-economic recovery for individual states in the U.S. by employing the Pareto optimality and genetic algorithms. …”
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Image1_Applying the Hubbard-Stratonovich Transformation to Solve Scheduling Problems Under Inequality Constraints With Quantum Annealing.TIF
Published 2021“…Its current hardware implementation relies on D-Wave’s Quantum Processing Units, which are limited in terms of number of qubits and architecture while being restricted to solving quadratic unconstrained binary optimization (QUBO) problems. …”
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Image3_Applying the Hubbard-Stratonovich Transformation to Solve Scheduling Problems Under Inequality Constraints With Quantum Annealing.TIF
Published 2021“…Its current hardware implementation relies on D-Wave’s Quantum Processing Units, which are limited in terms of number of qubits and architecture while being restricted to solving quadratic unconstrained binary optimization (QUBO) problems. …”
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Image2_Applying the Hubbard-Stratonovich Transformation to Solve Scheduling Problems Under Inequality Constraints With Quantum Annealing.TIF
Published 2021“…Its current hardware implementation relies on D-Wave’s Quantum Processing Units, which are limited in terms of number of qubits and architecture while being restricted to solving quadratic unconstrained binary optimization (QUBO) problems. …”
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DataSheet1_Applying the Hubbard-Stratonovich Transformation to Solve Scheduling Problems Under Inequality Constraints With Quantum Annealing.pdf
Published 2021“…Its current hardware implementation relies on D-Wave’s Quantum Processing Units, which are limited in terms of number of qubits and architecture while being restricted to solving quadratic unconstrained binary optimization (QUBO) problems. …”