Table_1_Altered Transcription Factor Expression Responses to Exercise in Insulin Resistance.DOCX by Rocio Zapata-Bustos (10533320)

“…Q-rt-PCR analysis of RNA and immunoblot analysis from pre- and post-exercise muscle biopsies revealed several transcription and growth factors that had altered responses to exercise in insulin resistant participants. A significant increase (EGR3 and CTGF) and decrease (RELA and ATF2) in the mRNA expression of transcription and growth factors was found after exercise in the lean group, but not in the obese participants.…”

Test of the most likely period associated with orang-utan population decline. by Reeta Sharma (117636)

“…Note that LK Lot2 is Lower Kinabatangan Lot2 population. b) As 5a), and plotted for the last 5 kya. c) H1 to H4 represents four different hypotheses tested, each corresponding to one of the four factors and time periods that may have led to orang-utan population collapse (discussed in the text). …”

Relative expression of genes encoding enzymes in the lactose synthesis pathway. by Danielle G. Lemay (105771)

“…Color denotes change in gene expression from colostrum to transitional (Panel A) or transitional to mature (Panel B): red = significant increase; green = significant decrease; and yellow = no significant change in gene express levels between stages. …”

Data_Sheet_1_Pyrite-Based Cr(VI) Reduction Driven by Chemoautotrophic Acidophilic Bacteria.docx by Xinxing Liu (209373)

“…The highest reduction efficiency was achieved in the biological system with a pH range of 1–1.5. Pyrite dissolution and reactive site regeneration were promoted by A. ferrooxidans, which resulted in the enhanced effect in Cr(VI) reduction. …”

Simulations Demonstrating the Effects of Varying the Degree of Resistance on Treatment Success Rates by Marcel E Curlin (32388)

“…<p>As in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.0030133#pcbi-0030133-g005" target="_blank">Figures 5</a> and <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.0030133#pcbi-0030133-g006" target="_blank">6</a>, (A) and (C) demonstrate success rates as the duration of induction therapy is increased, and (B) and (D) demonstrate success rates over a range of induction therapy/therapy intensification start times. …”

Modeling the RA Morphogen Gradient by Richard J White (82003)

“…Values of parameters that differed between panels were β = 1 ([A–E] and solid curve in [G]) or 0.5 ([F], [H], and dashed curve in [G]); <i>x</i>_f = 400 μm ([A–C] and [F–H]) or 450 μm (D–E); <i>f</i>₀ = 0 (B), 400 ([A], [C], [F–H], and solid curves in [D] and [E]), or 1,100 (dashed curves in [D] and [E]); <i>k</i>_deg = 500 sec⁻¹ ([A] and [C–G]) or 0.03 sec⁻¹ (B); <i>k</i>_max = 0.001 ([A] and [C–G]) or 4 (B); <i>V</i>(<i>x</i>) = 5 for <i>x</i> > <i>x</i>_f – 40, zero otherwise ([A], [D], [E], and solid curves in [B], [C], and [G]), 2.5 for <i>x</i> > <i>x</i>_f – 40, zero otherwise (dashed curves in [B] and [C]), 0.2 for all <i>x</i> ([F], dashed curve in [G], and solid curve in [H]), or 0.1 for all <i>x</i> (dashed curve in [H]).…”

Data_Sheet_1_The Responses of Germ-Free Zebrafish (Danio rerio) to Varying Bacterial Concentrations, Colonization Time Points, and Exposure Duration.docx by Fang Tan (353838)

“…The results indicated that the final bacteria concentrations ranging from 10² to 10⁴ CFU/ml did not cause any mortality when GF mono-associated larvae were exposed to either E. coli DH5α or B. subtilis WB800N at 3 or 5 dpf, while concentrations ranging from 10⁶ to 10⁷ CFU/ml increased the mortality, particularly for 5 dpf owing to the decrease in dissolved oxygen level. …”

<i>ELMO1</i> promotes cell migration and invasion by RA FLS. by John W. Whitaker (728679)

“…<p>(<b>A</b>) Cell migration in the wound closure assay shows that <i>ELMO1</i> knockdown with siRNA decreases cell migration whereas the control or ELMO2 siRNAs do not. …”

Gangliosides are required for viral capture mediated by mDC. by Nuria Izquierdo-Useros (91232)

“…Data show mean values and standard error of the mean (SEM) from five independent experiments including cells from at least six donors. mDCs capture significantly higher amounts of GM3-containing LUV_HIV-tRed than Cer or Ø LUV_HIV-tRed (<i>p</i><0.0001, paired <i>t</i> test). mDCs capture significantly higher amounts of GM1a-containing LUV_HIV-tRed than negatively charged PS-LUV_HIV-tRed (<i>p</i> = 0.0081, paired <i>t</i> test). …”

Quantitative analysis <i>in vivo</i> MRI scans. by Lucas W. E. Starmans (379995)

“…<p><i>In vivo</i> T₂ of the thrombus pre- and post-injection with FibPep-ION-Micelles (n = 5) and NCFibPep-ION-Micelles (n = 4). The horizontal lines represent the group means and the average mean for the two groups combined (n = 9). …”

HepR21 cells have increased resilience to nutrient deprivation compared to HepG2 cells. by Paramita Saha (473954)

“…A set of cells were kept as control. The survivability of HepR21 cells was found to remain unaffected while HepG2 cells were highly sensitive upon prolonged starvation with an overall 50% decrease in growth after 36 h of starvation. …”

DataSheet_1_Treatment With Lipopolysaccharide Induces Distinct Changes in Metabolite Profile and Body Weight in 129Sv and Bl6 Mouse Strains.docx by Maria Piirsalu (8627697)

“…According to the general linear model analysis (GLM), the 1.5 h LPS challenge in Bl6 caused a decrease of propionylcarnitine (C3), glucogenic amino acids, and acetylornithine (Ac-Orn), whereas the response of 129Sv included decreased concentrations of short-chain acylcarnitines (SCACs), citrulline, and elevation of glycerophospholipid (PCaa C42:0) and sphingolipid [SM(OH)C16:1]. 24 h after LPS administration, robust alterations in lipid profile were observed in both strains. …”

Infiltration of blood clots by cancer cells. by Stephanie Rossnagl (553093)

“…(F) Evaluation of cancer cell numbers when injected 5 minutes after clot induction showed a significant decrease in the number of cancer cells detected in the bone marrow at 1 hour after clot induction (p<0.05) but not at later time points (4, 24 and 48 hours after clot induction) (p = ns). n = 4–8 per time point.…”

Responses of earthworms to worm grunting vibrations. by Kenneth C. Catania (247359)

“…No significant direction preference was found (Rayleigh test; P = 0.261, Z = 1.35). E. The mean speed of 5 worms that emerged as a result of vibrations. …”

IP₃Rs are essential for EMT through calcineurin activity during endocardial cushion development in mice. by Keiko Uchida (242720)

“…<p>(<i>A</i>) Hematoxylin and eosin staining, alcian blue staining, staining with biotinylated hyaluronan binding protein and whole-mount <i>in situ</i> hybridization for a marker of the atrioventricular (AV) myocardium (Tbx2) of <i>IP₃R1^+/−-IP₃R2^−/−</i> (upper panels) and <i>IP₃R1^−/−-IP₃R2^−/−</i> (lower panels) embryos at E9.5. …”

Shed GP induces secretion of cytokines from DCs and MØ. by Beatriz Escudero-Pérez (663743)

“…<p>(<b>A</b>) 5×10⁵ of DCs (in white) and MØ (in gray) were incubated for 24 h with concentrated culture supernatants as in <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1004509#ppat-1004509-g002" target="_blank">Figure 2</a>. …”

Effects of single binding site changes on absolute levels, timing or variability of stoichiometry. by Yifat Goldschmidt (743726)

“…<p>(a) A scheme of the promoters of Rec8, Dmc1 and Mei5. …”

Statistical results from mixed-effects ANOVAs for all metabolic and hormonal variables. by Amy C. Reynolds (314616)

“…A trend for decreasing testosterone was found. …”

Image_1_Assessment of Epigenetic and Phenotypic Variation in Populus nigra Regenerated via Sequential Regeneration.tif by Weixi Zhang (1626823)

“…We detected a significant difference in methylation levels between first regeneration regenerated plants (G1) and those of the other four generations (G2–G5); there were no significant differences among the four later generations. …”

Data Sheet 1_Mechanical property changes of glial LC and RGC axons in response to high intraocular pressure.docx by Bochao Ma (14572143)

“…</p>Results<p>Compared to the control group, the Young's modulus of the glial LC decreased by 35.5%, 74.2%, and 80.6% at 4, 8, and 12 weeks of elevated IOP, respectively. …”