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algorithm tissue » algorithm seu (Expand Search)
fibrin function » brain function (Expand Search)
python function » protein function (Expand Search)
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GO enrichment for all methods and tissues.
Published 2024“…Using RNAseq gene expression data measured in two tissues derived from an outbred population of Drosophila melanogaster, we show that (a) the SBM is able to find ten times as many groups as competing methods, that (b) several of those gene groups are not modular, and that (c) the functional enrichment for non-modular groups is as strong as for modular communities. …”
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Differential analysis between the high- and low-risk score groups and functional analyses of DEGs.
Published 2024Subjects: -
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Comparative analysis of spatial architectures and cellular proportions in Lung, Breast, and Intestinal tissues recovered by different mapping tools.
Published 2025Subjects: “…minimizing assignment algorithm…”
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Characterization of cell distribution in mouse kidney and renal cell carcinoma (RCC) tissues using Cell2Spatial.
Published 2025Subjects: “…minimizing assignment algorithm…”
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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Python code for a rule-based NLP model for mapping circular economy indicators to SDGs
Published 2025“…The package includes:</p><ul><li>The complete Python codebase implementing the classification algorithm</li><li>A detailed manual outlining model features, requirements, and usage instructions</li><li>Sample input CSV files and corresponding processed output files to demonstrate functionality</li><li>Keyword dictionaries for all 17 SDGs, distinguishing strong and weak matches</li></ul><p dir="ltr">These materials enable full reproducibility of the study, facilitate adaptation for related research, and offer transparency in the methodological framework.…”
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