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harding function » hardening function (Expand Search), hearing functions (Expand Search), varying functions (Expand Search)
python function » protein function (Expand Search)
where function » sphere function (Expand Search), gene function (Expand Search), wave function (Expand Search)
harding function » hardening function (Expand Search), hearing functions (Expand Search), varying functions (Expand Search)
python function » protein function (Expand Search)
where function » sphere function (Expand Search), gene function (Expand Search), wave function (Expand Search)
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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”
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An expectation-maximization algorithm for finding noninvadable stationary states.
Published 2020“…<p><i>(a)</i> Noninvadable states by definition can only exist in the region Ω of resource space where the growth rate <i>dN</i><sub><i>i</i></sub>/<i>dt</i> of each species <i>i</i> is zero or negative. …”
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”
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Using synthetic data to test group-searching algorithms in a context where the correct grouping of species is known and uniquely defined.
Published 2024“…The reaction network is assumed to form a linear degradation chain 1 → 2 → ⋯ → <i>N</i> with the end-product concentration (metabolite <i>N</i>, orange) taken as the function of interest (shown with <i>N</i> = 3 as an example). …”
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500 <i>ϕ</i> vectors learned from hard thresholding.
Published 2023“…More specifically, at the same sparsity level, the thresholding algorithm using the <i>ℓ</i><sub>1</sub> norm as a penalty requires a dictionary of ten times more units compared to the proposed approach, where a non-convex continuous relaxation of the <i>ℓ</i><sub>0</sub> pseudo-norm is used, to reconstruct the external stimulus equally well. …”
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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results
Published 2025“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”
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Frequency of binding site usage as a function of binding site length.
Published 2024Subjects: “…unlike approximation algorithms…”
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A hybrid algorithm based on improved threshold function and wavelet transform.
Published 2024Subjects: -
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ADT: A Generalized Algorithm and Program for Beyond Born–Oppenheimer Equations of “<i>N</i>” Dimensional Sub-Hilbert Space
Published 2020“…In order to overcome such shortcoming, we develop a generalized algorithm, “ADT” to generate the nonadiabatic equations through symbolic manipulation and to construct highly accurate diabatic surfaces for molecular processes involving excited electronic states. …”