NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

Sub-model-specific gene sets with functional annotations and weights. by Josh L. Espinoza (10492448)

Genetic algorithm RfaH designs exhibit greater sequence similarity to NusG-like foldswitching proteins than non-foldswitching proteins. by Lu Hong (399882)

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Top-ranked hub genes identified by 5 cytoHubba algorithms. by Jun Li (6494)

Optimization Performance Comparison of Metaheuristic Algorithms. by Xie Qiu (13243770)

Fraction of selective neurons as a function of the imaging signal-to-noise ratio. by Ziqiang Wei (5953964)

Pairwise alignment results from human proteins and <i>H</i>. <i>pylori</i> proteins using Blosum 62 and PM250 algorithms. by Andrés Sánchez Caraballo (15354081)

Modeling with uniform <i>σ</i> values. by Giacomo Janson (8138517)

A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry by Oliver M. Crook (6013703)

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A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry by Oliver M. Crook (6013703)

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Demonstration of the combinatorial Hill functions (A and B), and the regulation function (C and D) under the regulation of an activator and a repressor. by Ruihao Li (2908991)

Table2_Predicting Human Protein Subcellular Locations by Using a Combination of Network and Function Features.XLSX by Lei Chen (54296)

“…In this study, the protein–protein interaction network, functional annotation of proteins and a group of direct proteins with known subcellular localization were used to construct models. …”

Table3_Predicting Human Protein Subcellular Locations by Using a Combination of Network and Function Features.XLSX by Lei Chen (54296)

“…In this study, the protein–protein interaction network, functional annotation of proteins and a group of direct proteins with known subcellular localization were used to construct models. …”

Table4_Predicting Human Protein Subcellular Locations by Using a Combination of Network and Function Features.XLSX by Lei Chen (54296)

“…In this study, the protein–protein interaction network, functional annotation of proteins and a group of direct proteins with known subcellular localization were used to construct models. …”

Table1_Predicting Human Protein Subcellular Locations by Using a Combination of Network and Function Features.XLSX by Lei Chen (54296)

“…In this study, the protein–protein interaction network, functional annotation of proteins and a group of direct proteins with known subcellular localization were used to construct models. …”

NLDock: a Fast Nucleic Acid–Ligand Docking Algorithm for Modeling RNA/DNA–Ligand Complexes by Yuyu Feng (11371729)

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Steering system model. by Honglei Pang (22693724)

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Braking system model. by Honglei Pang (22693724)

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Code snippets to add user-specific custom functionality in PyNoetic. by Gursimran Singh (575288)

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Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking by Hahnbeom Park (665004)

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