Elapsed time of algorithms on benchmark functions. by Muhammad Zubair Rehman (11243478)

“…<p>Elapsed time of algorithms on benchmark functions.</p>…”

Python cv coding screenshots of all developed fingerprints on distinct surfaces. by Nisha Yadav (366131)

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Code snippets to add user-specific custom functionality in PyNoetic. by Gursimran Singh (575288)

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Table_2_Delayed Comparison and Apriori Algorithm (DCAA): A Tool for Discovering Protein–Protein Interactions From Time-Series Phosphoproteomic Data.DOCX by Lianhong Ding (9753227)

“…In addition, phosphorylation is a key posttranslational modification (PTM) that is indicative of possible protein function changes in cellular processes. Analysis of time-series phosphoproteomic data should provide more meaningful information about protein interactions. …”

Table_1_Delayed Comparison and Apriori Algorithm (DCAA): A Tool for Discovering Protein–Protein Interactions From Time-Series Phosphoproteomic Data.XLSX by Lianhong Ding (9753227)

“…In addition, phosphorylation is a key posttranslational modification (PTM) that is indicative of possible protein function changes in cellular processes. Analysis of time-series phosphoproteomic data should provide more meaningful information about protein interactions. …”

Python-based Monte Carlo Simulation Tool by Yangfan Jiang (9372782)

Modular architecture design of PyNoetic showing all its constituent functions. by Gursimran Singh (575288)

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PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... by Yuxi Long (11024307)

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Comparison of PyNoetic’s functionality for BCI design with other existing state-of-the-art frameworks. by Gursimran Singh (575288)

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A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry by Oliver M. Crook (6013703)

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A Functional Bayesian Model for Hydrogen–Deuterium Exchange Mass Spectrometry by Oliver M. Crook (6013703)

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Average function evaluation times of the three optimization algorithms. by Shuhui Yu (1535500)

“…<p>Average function evaluation times of the three optimization algorithms.…”

Visualization by PaCMAP [52] shows that persistence fingerprint clusters protein-ligand complexes with similar binding affinity reasonably well, even beyond the training dataset (P... by Yuxi Long (11024307)

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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Overview of functionality supported by PyNoetic and its various modules, including the live analysis and programmable flowchart. by Gursimran Singh (575288)

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Average CPU time (s) of all the referenced algorithm on benchmark function. by Aihua Guo (13267712)

“…<p>Average CPU time (s) of all the referenced algorithm on benchmark function.…”

Scheduling time of five algorithms. by Huichao Guo (14515171)

“…<div><p>This paper aims to solve the scheduling optimization problem in the emergency management of long-distance natural gas pipelines, with the goal of minimizing the total scheduling time. To this end, the objective function of the minimum total scheduling time is established, and the relevant constraints are set. …”

ROC Plots with 99% confidence interval (shaped region) for all-functional parameters of KCNQ1 channel considered in this study. by Saksham Phul (12437059)

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Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... by Yuxi Long (11024307)

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PATH⁺ explains tighter binding of carbonic anhydrase II by brinzolamide. by Yuxi Long (11024307)

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