Pipeline of the interactor algorithm. حسب Jose Cleydson F. Silva (8685594)

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit حسب Gonzalo Colmenarejo (650249)

"…For a RDKit molecule, it provides (i) a PNG binary string with an image of the molecule with color-highlighted functional groups; (ii) a list of sets of atom indices (idx), each set corresponding to a functional group; (iii) a list of pseudo-SMILES canonicalized strings for the full functional groups; and (iv) a list of RDKit labeled mol objects, one for each full functional group. …"

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz حسب Faizan Ali (21689861)

الموضوعات:

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results حسب Se-Hee Jo (20554623)

"…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …"

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer حسب Morgan Najera (21540776)

"…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…"

Depiction of how the label of is assigned as a function of whether are identical (row =), nested (rows ), or partially overlapping (row “else”), and as a function of the labels of... حسب Jordan Moutet (21800145)

Immune infiltration analysis by CIBERSORT algorithm. حسب Lanying Shen (22755930)

Immune infiltration analysis by CIBERSORT algorithm. حسب Lanying Shen (22755930)

The results of LASSO regression algorithm. حسب Xue Fu (549661)

The algorithm is designed to identify patterns in the treatment dataset. حسب Belén Otero-Carrasco (21262360)

"…<p>This process involves two key functions. First, from lines 1 to 8, the algorithm identifies amino acids that meet the occurrence threshold, starting with patterns of length 1. …"

A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. حسب Jose Cleydson F. Silva (8685594)

Top-ranked hub genes identified by 5 cytoHubba algorithms. حسب Jun Li (6494)

Left: the algorithm’s best estimate of where to put breakpoints for each number of breakpoints considered. حسب Zhengtian Li (5076704)

The GOR4 and SOPMA algorithm findings. حسب Ahmad Abdullah Mahdeen (19704401)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome حسب Olga Botvinnik (20571431)

الموضوعات:

Core genes were selected through PPI analysis based on three algorithms. حسب Dong-Hee Han (140305)

"…<b>(B)</b> The priority of the top 10 genes was evaluated through MNC, which identifies clusters of protein nodes that are more functionally connected to each other and selects the central proteins within the cluster. …"

(a-b) The LASSO algorithm was used for hyperparameter tuning and identification of the important predictive features. حسب Devi Soorya Narayana Sasikumar (22331743)

الموضوعات:

PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. حسب Yuxi Long (11024307)

الموضوعات:

Two protein-ligand complexes shown with their persistence fingerprint. حسب Yuxi Long (11024307)

الموضوعات:

MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins حسب Martin J. Fossat (3714079)

الموضوعات: "…mathematically exact algorithm…"