Adaptive H-REMD simulation algorithm. by Danial Pourjafar-Dehkordi (7165523)

Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…<p>A) Resulting cluster inertia from applying the k-means algorithm described in the methods to empirical averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

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The GOR4 and SOPMA algorithm findings. by Ahmad Abdullah Mahdeen (19704401)

The results of LASSO regression algorithm. by Xue Fu (549661)

SARS-CoV-2—human protein complex map showing complexes identified by Super.Complex. by Meghana Venkata Palukuri (11890672)

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Different topologies are exhibited by human protein complexes. by Meghana Venkata Palukuri (11890672)

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Cost functions implemented in Neuroptimus. by Máté Mohácsi (20469514)

Examples of complexes with proteins having low annotation scores. by Meghana Venkata Palukuri (11890672)

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Learned human protein complexes with Super.Complex achieve good PR curves and follow similar size distributions as known complexes. by Meghana Venkata Palukuri (11890672)

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Evaluating learned complexes on hu.MAP w.r.t ‘refined CORUM’ complexes. by Meghana Venkata Palukuri (11890672)

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PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. by Yuxi Long (11024307)

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Functional enrichment analysis of DEGs. by Huiling Deng (4427161)

Average quality scores of the models of the analysis set as a function of the <i>w</i>_<i>SP</i> with which the DOPE potential has been included in the objective function... by Giacomo Janson (8138517)

NLDock: a Fast Nucleic Acid–Ligand Docking Algorithm for Modeling RNA/DNA–Ligand Complexes by Yuyu Feng (11371729)

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PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... by Yuxi Long (11024307)

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Listed python codes of our algorithm with explanations (Python 3.9 recommended). by Takayuki Niizato (162226)

Super.Complex identifies likely protein complexes within a PPI network using a distributed supervised AutoML method. by Meghana Venkata Palukuri (11890672)

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3D modeling qualities of the AS single-template models built by including DOPE in the objective function of MODELLER. by Giacomo Janson (8138517)