Code and data for evaluating oil spill amount from text-form incident information حسب Yiming Liu (18823387)

"…These are separately stored in the folders “description” and “posts”.</p><h2>Algorithms for Evaluating Release Amount (RA)</h2><p dir="ltr">The algorithms are split into the following three notebooks based on their functions:</p><ol><li><b>"1_RA_extraction.ipynb"</b>:</li><li><ul><li>Identifies oil spill-related incidents from raw incident data.…"

COI reference sequences from BOLD DB حسب John Sundh (12853901)

"…<br>The file bold_clustered.sintax.fasta.gz is directly compatible with the SINTAX algorithm in vsearch while files bold_clustered.assignTaxonomy.fasta.gz and bold_clustered.addSpecies.fasta.gz are directly compatible with the assignTaxonomy and addSpecies functions from DADA2, respectively. …"

Table2_A Novel Necroptosis-Related Gene Signature in Skin Cutaneous Melanoma Prognosis and Tumor Microenvironment.XLSX حسب Binyu Song (13025763)

"…A predictive nomogram had been built for providing a more beneficial prognostic indicator for the clinic. Functional enrichment analysis showed significant enrichment of immune-related signaling pathways, a higher degree of immune cell infiltration in the low-risk group than in the high-risk group, a negative correlation between risk scores and most immune checkpoint inhibitors (ICIs), anticancer immunity steps, and a more sensitive response to immunotherapy in the low-risk group.…"

DataSheet1_A Novel Necroptosis-Related Gene Signature in Skin Cutaneous Melanoma Prognosis and Tumor Microenvironment.docx حسب Binyu Song (13025763)

"…A predictive nomogram had been built for providing a more beneficial prognostic indicator for the clinic. Functional enrichment analysis showed significant enrichment of immune-related signaling pathways, a higher degree of immune cell infiltration in the low-risk group than in the high-risk group, a negative correlation between risk scores and most immune checkpoint inhibitors (ICIs), anticancer immunity steps, and a more sensitive response to immunotherapy in the low-risk group.…"

Table3_A Novel Necroptosis-Related Gene Signature in Skin Cutaneous Melanoma Prognosis and Tumor Microenvironment.XLSX حسب Binyu Song (13025763)

"…A predictive nomogram had been built for providing a more beneficial prognostic indicator for the clinic. Functional enrichment analysis showed significant enrichment of immune-related signaling pathways, a higher degree of immune cell infiltration in the low-risk group than in the high-risk group, a negative correlation between risk scores and most immune checkpoint inhibitors (ICIs), anticancer immunity steps, and a more sensitive response to immunotherapy in the low-risk group.…"

Table1_A Novel Necroptosis-Related Gene Signature in Skin Cutaneous Melanoma Prognosis and Tumor Microenvironment.XLSX حسب Binyu Song (13025763)

"…A predictive nomogram had been built for providing a more beneficial prognostic indicator for the clinic. Functional enrichment analysis showed significant enrichment of immune-related signaling pathways, a higher degree of immune cell infiltration in the low-risk group than in the high-risk group, a negative correlation between risk scores and most immune checkpoint inhibitors (ICIs), anticancer immunity steps, and a more sensitive response to immunotherapy in the low-risk group.…"

DataSheet_4_Unraveling the chicken T cell repertoire with enhanced genome annotation.fasta حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

DataSheet_3_Unraveling the chicken T cell repertoire with enhanced genome annotation.csv حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

DataSheet_2_Unraveling the chicken T cell repertoire with enhanced genome annotation.fasta حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

DataSheet_5_Unraveling the chicken T cell repertoire with enhanced genome annotation.csv حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

DataSheet_7_Unraveling the chicken T cell repertoire with enhanced genome annotation.zip حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

Supplementary Material for: Prediction of the Signaling Pathway in Polycystic Ovary Syndrome Using an Integrated Bioinformatics Approach حسب Fadilah F. (19095791)

"…After that, we performed an analysis of the hub-gene clusters extracted from the PPIN using the ShinyGO algorithm. In the final step of this research project, functional enrichment analysis was used to investigate the primary biological activities and signaling pathways that were associated with the hub clusters. …"

DataSheet_6_Unraveling the chicken T cell repertoire with enhanced genome annotation.fasta حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

DataSheet_1_Unraveling the chicken T cell repertoire with enhanced genome annotation.csv حسب Simon P. Früh (9569431)

"…Taken together, our TCR repertoire analysis allowed us to decipher the composition, diversity, and functionality of T cells in chickens. This work not only represents a significant step towards understanding avian T cell biology, but will also shed light on host-pathogen interactions, vaccine development, and the evolutionary history of avian immunology.…"

Additional data for the polyanion sodium cathode materials dataset حسب Martin Hoffmann Petersen (13626778)

"…The Perdew-Burke-Ernzerhof (PBE) functional with Hubbard-U corrections were appliedwas utilized for all calculations. …"

BrainPepPass: all scripts حسب Ewerton de Oliveira (16033631)

"…</p> <p><br></p> <p>Obs: Among the compressed files, there is the sLE_functions.py script. This script is responsible for providing the necessary functions of the sLE algorithms to run BrainPepPass framework.…"

Table2_Identification of immune signatures in Parkinson’s disease based on co-expression networks.XLSX حسب Xiaolin Dong (301588)

"…The modules with the top 5 functional scores and the number of core genes greater than six were selected as PD-related gene modules. …"

Table3_Identification of immune signatures in Parkinson’s disease based on co-expression networks.XLSX حسب Xiaolin Dong (301588)

"…The modules with the top 5 functional scores and the number of core genes greater than six were selected as PD-related gene modules. …"

Table9_Identification of immune signatures in Parkinson’s disease based on co-expression networks.DOCX حسب Xiaolin Dong (301588)

"…The modules with the top 5 functional scores and the number of core genes greater than six were selected as PD-related gene modules. …"

Table5_Identification of immune signatures in Parkinson’s disease based on co-expression networks.XLSX حسب Xiaolin Dong (301588)

"…The modules with the top 5 functional scores and the number of core genes greater than six were selected as PD-related gene modules. …"