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within function » fibrin function (Expand Search), protein function (Expand Search), catenin function (Expand Search)
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models section » model selection (Expand Search)
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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”
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The algorithm of section classifiers.
Published 2023Subjects: “…corresponding standardized sections…”
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Full Algorithm Visualization: Pre-Processing, Model Training, and Model Application Sections.
Published 2024“…<p>Full Algorithm Visualization: Pre-Processing, Model Training, and Model Application Sections.…”
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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results
Published 2025“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”
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Algorithm for generating virtual patients.
Published 2021“…<b>4)</b> Optimizing the objective function provides a parameter set for which the patient response to SARS-CoV-2 will be within the physiological ranges. …”
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An expectation-maximization algorithm for finding noninvadable stationary states.
Published 2020“…<i>(c)</i> Pseudocode for self-consistently computing <b>R</b>* and , which is identical to standard expectation-maximization algorithms employed for problems with latent variables in machine learning.…”
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A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data
Published 2022Subjects: -
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”
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EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit
Published 2025“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”
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Image 4_Construction of a right ventricular function assessment model in patients undergoing invasive mechanical ventilation based on VExUS grading and the classification and regre...
Published 2025“…Objective<p>Investigate the correlation between right ventricular function ultrasound indicators and the Venous Excess Ultrasound (VExUS) grading system in patients undergoing invasive mechanical ventilation (IMV), and develop a right ventricular function assessment model using VExUS grading and the Classification and Regression Tree (CART) algorithm.…”
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Image 1_Construction of a right ventricular function assessment model in patients undergoing invasive mechanical ventilation based on VExUS grading and the classification and regre...
Published 2025“…Objective<p>Investigate the correlation between right ventricular function ultrasound indicators and the Venous Excess Ultrasound (VExUS) grading system in patients undergoing invasive mechanical ventilation (IMV), and develop a right ventricular function assessment model using VExUS grading and the Classification and Regression Tree (CART) algorithm.…”