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EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit
Published 2025“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”
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Linear-regression-based algorithms succeed at identifying the correct functional groups in synthetic data, and multi-group algorithms recover more information.
Published 2024“…<p>(A), (B) Algorithm performance, evaluated over 50 simulated datasets generated as described in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012590#pcbi.1012590.g001" target="_blank">Fig 1</a> with <i>N</i> = 3 true groups, 900 samples and 10% simulated measurement noise. …”
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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results
Published 2025“…A Python-based algorithm was developed for estimating the nonrandom two-liquid (NRTL) model parameters of aqueous binary systems in a straightforward manner from simplified molecular-input line-entry specification (SMILES) strings of substances in a system. …”
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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…</p><p dir="ltr">The package includes:</p><ul><li>Scripts for first-order analysis, third-order modeling, optimization using a Physically Grounded Merit Function (PGMF), and RMS-based refinement.…”
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FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz
Published 2025Subjects: -
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Change of ITAE objective function for en-CSA, CSA, RUN, PDO and RIME algorithms.
Published 2024Subjects: -
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If datasets are small and/or noisy, linear-regression-based algorithms for identifying functional groups outperform more complex versions.
Published 2024“…<p>We compare the performance of the linear-regression-based Metropolis algorithm to a more expressive version that includes quadratic terms. …”
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A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data
Published 2022Subjects: -
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ITAE objective function values for all runs of en-CSA, CSA, RUN, PDO and RIME algorithms.
Published 2024Subjects: -
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Boxplot analysis for ITAE objective function using en-CSA, CSA, RUN, PDO and RIME algorithms.
Published 2024Subjects: