Applying PEPSDI on synthetic data from circadian clock gene expression model. حسب Sebastian Persson (9241307)

"…The model consists of two states (mRNA, Protein), and four reactions with associated rate constants <b>c</b> = (<i>c</i>₁, …, <i>c</i>₄). …"

Analysis of novel miRNAs in <i>E. histolytica</i> EVs. حسب Barbara Honecker (10328267)

ProSAAS is expressed in multiple cell types in a mixed species meta-analysis. حسب Nicholas Schaffer (21376843)

Gene expression omnibus datasets. حسب Xinyi Xia (7516694)

"…TCMR hub genes, guanylate-binding protein 1 (GBP1) and CD69, showed increased expression. …"

Clustering of residue to epitope clusters. حسب Assaf Amitai (789399)

Construction of PPI network and screening of hub genes. حسب Lei Wang (6656)

Fig 1 - حسب Jyoti Rani (4850281)

During non-lethal stress, non-canonical cleavage of CASP7 occurs at calpain cleavage sites; related to Fig 4. حسب Gayathri Samarasekera (2610199)

Subgraph of the STRING reference, physical network showing the three InfoMap-based communities with highest average ENQUIRE-informed Q-scores. حسب Luca Musella (19986312)

Comparison against the commercial scanner. حسب Swathi Lakshmi Balasubramanian (12078093)

Illustration of persistence for a 2D point cloud data (PCD). حسب Soham Mukherjee (3827227)

stQSSA can distort the dynamics of a biological oscillator. حسب Yun Min Song (11577023)

"…<b>(b-c)</b> Oscillatory trajectories of <i>M</i> (green) and <i>R</i>_T/<i>A</i>_T (orange) simulated with the full model (b top) and the reduced model (b bottom), using the Gillespie algorithm (see Tables C and D in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008952#pcbi.1008952.s001" target="_blank">S1 Appendix</a> for propensity functions). …"

stQSSA can distort the dynamics of a bistable switch. حسب Yun Min Song (11577023)

"…<b>(b-c)</b> Simulated trajectories (b) and the stationary distributions (c) of <i>M</i>_T from the full model and the reduced model using the Gillespie algorithm (see Tables E and F in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008952#pcbi.1008952.s001" target="_blank">S1 Appendix</a> for propensity functions). …"

Kinetics of IL-17A during infection with <i>M</i>. <i>bovis</i> strains 534 and 04–303. حسب Yadira Rodríguez-Míguez (19172770)

Big Data and Metadata Framework Environment developed by the Big Data Science Center (BDSC) at Shanghai Synchrotron Radiation Facility (SSRF) حسب Alessandro Sepe (10304915)

الموضوعات:

my-home-is-my-secret.zip حسب Anna Brauer (11266881)

"…</p> <p><br></p> <p>The material contains two folders; each contains an implementation of the algorithm, one in Java and one in Python.<br> </p> <p><br></p> <p>The Python script includes a function (example()) demonstrating how the mechanism class ('STT') may be used. …"

Known compounds and new lessons: structural and electronic basis of flavonoid-based bioactivities حسب Rohan J. Meshram (6563189)

"…Abbreviations2′HFN-2′</p><p>hydroxy flavonone</p>2D<p>2 dimension</p>3D<p>3 dimension</p>3H7MF<p>3-hydroxy-7-methoxy flavone</p>4′HFN-4′<p>hydroxy flavonone</p>4′MF- 4′<p>methoxy flavone</p>7HFN<p>7-hydroxy flavonone</p>CHARMM<p>Chemistry at Harvard Macromolecular Mechanics</p>COX<p>cyclooxygenase</p>COX-1<p>cyclooxygenase-1</p>COX-2<p>cyclooxygenase-2</p>DM<p>dipole moment</p>DPPH- 2, 2<p>diphenyl-1-picryl hydrazine</p>EA<p>electron affinities</p>EGFR<p>epidermal growth factor receptor</p>E-HOMO<p>Highest occupied molecular orbital energy</p>E-LUMO<p>Lowest unoccupied molecular orbital energy</p>EPA<p>eicosapentaenoic acid</p>FROG2<p>FRee Online druG conformation generation</p>GA<p>Genetic Algorithm</p>GROMACS<p>GROningen MAchine for Chemical Simulations</p>HOMO<p>Highest occupied molecular orbital</p>IP<p>Ionization potential</p>LOMO<p>Lowest unoccupied molecular orbital</p>MD<p>Molecular dynamics</p>MO<p>Molecular orbital</p>NAMD<p>Nanoscale Molecular Dynamics</p>NSAIDs<p>Non-Steroidal Anti Inflammatory Drugs</p>Ns<p>nanoseconds</p>NVE<p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p>PDB-ID<p>Protein Data Bank Identifier</p>PME<p>Particle Mesh Ewald</p>PyRX<p>Python Prescription</p>RMSD<p>Root-Mean-Square Deviation</p>RMSF<p>Root-Mean-Square Fluctuation</p>RLS<p>reactive lipid species</p>ROS<p>Reactive Oxygen Species</p>SASA<p>solvent accessible surface area</p>SMILES<p>simplified molecular-input line-entry system</p>SOR<p>superoxide anion radical</p>UFF<p>Universal force field</p>VEGF<p>vascular endothelial growth factor</p>VEGFR<p>vascular endothelial growth factor receptor</p>VMD<p>Visual molecular dynamics</p><p></p> <p>hydroxy flavonone</p> <p>2 dimension</p> <p>3 dimension</p> <p>3-hydroxy-7-methoxy flavone</p> <p>hydroxy flavonone</p> <p>methoxy flavone</p> <p>7-hydroxy flavonone</p> <p>Chemistry at Harvard Macromolecular Mechanics</p> <p>cyclooxygenase</p> <p>cyclooxygenase-1</p> <p>cyclooxygenase-2</p> <p>dipole moment</p> <p>diphenyl-1-picryl hydrazine</p> <p>electron affinities</p> <p>epidermal growth factor receptor</p> <p>Highest occupied molecular orbital energy</p> <p>Lowest unoccupied molecular orbital energy</p> <p>eicosapentaenoic acid</p> <p>FRee Online druG conformation generation</p> <p>Genetic Algorithm</p> <p>GROningen MAchine for Chemical Simulations</p> <p>Highest occupied molecular orbital</p> <p>Ionization potential</p> <p>Lowest unoccupied molecular orbital</p> <p>Molecular dynamics</p> <p>Molecular orbital</p> <p>Nanoscale Molecular Dynamics</p> <p>Non-Steroidal Anti Inflammatory Drugs</p> <p>nanoseconds</p> <p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p> <p>Protein Data Bank Identifier</p> <p>Particle Mesh Ewald</p> <p>Python Prescription</p> <p>Root-Mean-Square Deviation</p> <p>Root-Mean-Square Fluctuation</p> <p>reactive lipid species</p> <p>Reactive Oxygen Species</p> <p>solvent accessible surface area</p> <p>simplified molecular-input line-entry system</p> <p>superoxide anion radical</p> <p>Universal force field</p> <p>vascular endothelial growth factor</p> <p>vascular endothelial growth factor receptor</p> <p>Visual molecular dynamics</p> <p>Communicated by Ramaswamy H. …"

NanoDB: Research Activity Data Management System حسب Lorenci Gjurgjaj (19702207)

"…Cross-Platform Compatibility: Works on Windows, macOS, and Linux. In a Python environment or as an executable. Ease of Implementation: Using the flexibility of the Python framework all the data setup and algorithm can me modified and new functions can be easily added. …"

PREDICTION OF DEM PARAMETERS OF COATED FERTILIZER PARTICLES BASED ON GA-BP NEURAL NETWORK حسب Xin Du (208780)

"…The predicted values matched the expected output values, indicating that the GA-BP neural network can accurately predict the nonlinear function output, and the network predicted output can be approximated as the actual output of the function. …"

Code and Data for 'Fabrication and testing of lensed fiber optic probes for distance sensing using common path low coherence interferometry' حسب Radu Stancu (21165068)

"…Distance Sensing</p><p dir="ltr">Code and data to demonstrate extracting distance sensing data from A-scans and to generate Fig. 8 using the algorithm described in Fig. 7. Functions to generate distance measurements are in 'distance_sensing_utilities.py' and an example of how to use this on data in the 'data' folder is in 'distance_sensing_example.py', which generates Fig 8. …"