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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
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basis functions » basis function (Expand Search), loss functions (Expand Search), based functional (Expand Search)
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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Comparative statistical performance of various algorithms in minimizing the <i>F</i> cost function.
Published 2023“…<p>Comparative statistical performance of various algorithms in minimizing the <i>F</i> cost function.…”
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Bioinformatics pipeline for circadian function.
Published 2023“…Concordantly, strong positive correlations (0.5 < ρ < 1, red) should be apparent among transcriptional activators (e.g., <i>BMAL1</i> and <i>CLOCK</i>) and among transcriptional repressors (e.g., <i>NR1D1</i> and <i>PER2</i>), and a strong negative correlation (-0.5 > ρ > -1, blue) should be present amongst activators and repressor targets (e.g., <i>BMAL1</i> and <i>PER2</i>). …”
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Hyperparameter settings of the algorithm 1.
Published 2024“…Therefore, this paper presents a novel adaptive control structure for the Twin Delayed Deep Deterministic Policy Gradient algorithm, which is based on a reference trajectory model (TD3-RTM). …”
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