Data Sheet 1_Impaired and restored CD8+ T cell responses to a sequentially mutated spike epitope in Omicron variants.docx by Eun Joo Chung (9678137)

“…Our findings suggest that LYN may function both as an immune-evasive hotspot and as a cross-reactive epitope, underscoring the importance of continued epitope-level surveillance as future variants emerge.…”

DataSheet1_Identification of novel markers for neuroblastoma immunoclustering using machine learning.zip by Longguo Zhang (20105238)

“…Three machine learning algorithms (LASSO, SVM-RFE, and Random Forest) were used to screen biomarkers and synthesize their function in neuroblastoma.…”

Table 12_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 9_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 8_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 1_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 2_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 3_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 5_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.doc by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 13_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.doc by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 6_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 11_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 7_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 10_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Table 4_Decoding immune-metabolic crosstalk in ARDS: a transcriptomic exploration of biomarkers, cellular dynamics, and therapeutic pathways.xlsx by Ting Wu (106368)

“…RT-qPCR confirmed a significant upregulation of SMARCD3 and TCN1 in ARDS samples, aligning with dataset expression analysis results. Both in vitro and in vivo experiments demonstrated that modulation of SMARCD3 and TCN1 (but not RPL14) significantly affected mitochondrial function, oxidative stress, apoptosis, glucose metabolism and inflammatory cytokine expression.…”

Data Sheet 1_Multi-omics identification of a polyamine metabolism related signature for hepatocellular carcinoma and revealing tumor microenvironment characteristics.pdf by Yuexi Yu (21158744)

“…Immune cell infiltration was analyzed using the CIBERSORT algorithm. Finally, RT-qPCR experiments were conducted to validate the expression of key genes.…”

Table 1_Multi-omics identification of a polyamine metabolism related signature for hepatocellular carcinoma and revealing tumor microenvironment characteristics.xlsx by Yuexi Yu (21158744)

“…Immune cell infiltration was analyzed using the CIBERSORT algorithm. Finally, RT-qPCR experiments were conducted to validate the expression of key genes.…”

Table 2_Multi-omics identification of a polyamine metabolism related signature for hepatocellular carcinoma and revealing tumor microenvironment characteristics.xlsx by Yuexi Yu (21158744)

“…Immune cell infiltration was analyzed using the CIBERSORT algorithm. Finally, RT-qPCR experiments were conducted to validate the expression of key genes.…”

DataSheet1_Integration of transcriptomics and machine learning for insights into breast cancer: exploring lipid metabolism and immune interactions.docx by Xiaohan Chen (384089)

“…Our study revealed distinct biological functions and mutation landscapes between high-scoring and low-scoring patients. …”

Additional data for the polyanion sodium cathode materials dataset by Martin Hoffmann Petersen (13626778)

“…The Perdew-Burke-Ernzerhof (PBE) functional with Hubbard-U corrections were appliedwas utilized for all calculations. …”