Image 3_MetaboLINK is a novel algorithm for unveiling cell-specific metabolic pathways in longitudinal datasets.tiff by Jared Lichtarge (20548571)

“…For the first time, we applied the PCA-GLASSO algorithm (i.e., MetaboLINK) to metabolomics data derived from Nuclear Magnetic Resonance (NMR) spectroscopy performed on neural cells at various developmental stages, from human embryonic stem cells to neurons.…”

Image 1_MetaboLINK is a novel algorithm for unveiling cell-specific metabolic pathways in longitudinal datasets.jpeg by Jared Lichtarge (20548571)

“…For the first time, we applied the PCA-GLASSO algorithm (i.e., MetaboLINK) to metabolomics data derived from Nuclear Magnetic Resonance (NMR) spectroscopy performed on neural cells at various developmental stages, from human embryonic stem cells to neurons.…”

Image 4_MetaboLINK is a novel algorithm for unveiling cell-specific metabolic pathways in longitudinal datasets.tiff by Jared Lichtarge (20548571)

“…For the first time, we applied the PCA-GLASSO algorithm (i.e., MetaboLINK) to metabolomics data derived from Nuclear Magnetic Resonance (NMR) spectroscopy performed on neural cells at various developmental stages, from human embryonic stem cells to neurons.…”

Image 2_MetaboLINK is a novel algorithm for unveiling cell-specific metabolic pathways in longitudinal datasets.tiff by Jared Lichtarge (20548571)

“…For the first time, we applied the PCA-GLASSO algorithm (i.e., MetaboLINK) to metabolomics data derived from Nuclear Magnetic Resonance (NMR) spectroscopy performed on neural cells at various developmental stages, from human embryonic stem cells to neurons.…”

Data_Sheet_1_Resting-State Functional Connectivity Estimated With Hierarchical Bayesian Diffuse Optical Tomography.docx by Takatsugu Aihara (4433524)

Subjects:

Code snippets to add user-specific custom functionality in PyNoetic. by Gursimran Singh (575288)

Subjects:

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

Data Sheet 1_MetaboLINK is a novel algorithm for unveiling cell-specific metabolic pathways in longitudinal datasets.csv by Jared Lichtarge (20548571)

“…For the first time, we applied the PCA-GLASSO algorithm (i.e., MetaboLINK) to metabolomics data derived from Nuclear Magnetic Resonance (NMR) spectroscopy performed on neural cells at various developmental stages, from human embryonic stem cells to neurons.…”

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Training accuracy/loss as a function of epochs for different datasets. by Hiam Alquran (17636906)

Modular architecture design of PyNoetic showing all its constituent functions. by Gursimran Singh (575288)

Subjects:

Benchmark functions. by Qinghe Guo (21519322)

Comparison of PyNoetic’s functionality for BCI design with other existing state-of-the-art frameworks. by Gursimran Singh (575288)

Subjects:

A flow diagram to explain the algorithm named 2BDP (Biomarker Discovery Process at Binomial Decision Point) that we used to find the best fitting model to predict RRiF. by Nabarun Chakraborty (535772)

Overview of functionality supported by PyNoetic and its various modules, including the live analysis and programmable flowchart. by Gursimran Singh (575288)

Subjects:

Comparison of algorithms in two cases. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

Flow of the NSGA-II algorithm. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

Subjects:

An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements by Pascal Wang (10130612)

“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”