Probably pathogenic variants (algorithms). by Felipe Fidalgo (642532)

Python scripts used to model CPU errors by Poisson distribution density mass function and to draw graph of Poisson events (needs Matplot, SciPy, PysimpleGUI and NumPy) by Santhosh Kumar Rajamani (13023678)

Functional enrichment of DEGs. by Man Wang (110466)

“…</p><p>Methods</p><p>The study employed a combination of differential expression analysis, weighted gene co-expression network analysis (WGCNA), and various machine learning algorithms to screen for characteristic genes. …”

libEnsemble: New capabilities for coordinating dynamic ensembles of calculations by John-Luke Navarro (9024008)

Contrast enhancement of digital images using dragonfly algorithm by Soumyajit Saha (19726163)

“…Comparisons with state-of-art methods ensure the superiority of the proposed algorithm. The Python implementation of the proposed approach is available in this <a href="https://github.com/somnath796/DA_contrast_enhancement" target="_blank">Github repository</a>.…”

Analysis of weighted co-expression networks in Parkinson’s disease. by Lixia Chen (614030)

Available functions in the utility package. by Raul Castañeda (13932971)

Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

“…T cell exhaustion, characterized by the upregulation of inhibitory receptors and loss of effector functions, plays a crucial role in tumor immune evasion. …”

Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

“…T cell exhaustion, characterized by the upregulation of inhibitory receptors and loss of effector functions, plays a crucial role in tumor immune evasion. …”

Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

“…T cell exhaustion, characterized by the upregulation of inhibitory receptors and loss of effector functions, plays a crucial role in tumor immune evasion. …”

Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

“…T cell exhaustion, characterized by the upregulation of inhibitory receptors and loss of effector functions, plays a crucial role in tumor immune evasion. …”

Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

“…T cell exhaustion, characterized by the upregulation of inhibitory receptors and loss of effector functions, plays a crucial role in tumor immune evasion. …”

SARS-CoV-2—human protein complex map showing complexes identified by Super.Complex. by Meghana Venkata Palukuri (11890672)

Differential gene analysis and functional enrichment of the GSE775 dataset over time using the ClusterGVis package. by Wenlong Kuang (20485167)

Subjects:

A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

Available functions in the phase-shifting package. by Raul Castañeda (13932971)

Available functions in the numerical propagation package. by Raul Castañeda (13932971)

Available functions in the phase reconstruction package. by Raul Castañeda (13932971)

Comparison of scores obtained by our interpenetration and scoring algorithm (ISA) and ROSETTA for a subset of structures. by Kevin Sawade (16726527)

“…However, our algorithm was 1000 times faster than pyROSETTA (both algorithms have been parallelized on a per-structure basis using the Python package joblib [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010531#pcbi.1010531.ref069" target="_blank">69</a>]).…”

Functional enrichment of gene clusters identified in up-regulated drought tolerant network (uDTN) using MCL algorithm. by Sanchari Sircar (198485)