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algorithm density » algorithm design (Expand Search), algorithm reality (Expand Search), algorithm website (Expand Search)
density function » density functional (Expand Search)
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algorithm density » algorithm design (Expand Search), algorithm reality (Expand Search), algorithm website (Expand Search)
density function » density functional (Expand Search)
within function » fibrin function (Expand Search), python function (Expand Search), protein function (Expand Search)
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A) Probability density of glucuronate-UDP as a function of three collective variables (CVs): the distance between the C6 atom of the sugar and the atom of Lys307, defined as <i>d</i><sub><i>k</i></sub>, and the two angles <i>γ</i> and <i>θ</i> describing the orientation of the sugar ring in a polar coordinate system. B) RMSD of the probability density with respect to the initial state, calculated after 1 ns of simulation. The density of states is complex, and stable populations are observed at the end of the simulation. C) Probability density of glucose-UDP. D) RMSD of the density of states calculated as in B). In this case, convergence is even clearer. The density functions were computed by including all replicas from the Hamiltonian replica exchange simulation, with weights determined using the WHAM algorithm.
Published 2025“…In this case, convergence is even clearer. The density functions were computed by including all replicas from the Hamiltonian replica exchange simulation, with weights determined using the WHAM algorithm.…”
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Bayesian Clustering via Fusing of Localized Densities
Published 2024“…For example, if Gaussian kernels are used but the true density of data within a cluster is even slightly non-Gaussian, then clusters will be broken into multiple Gaussian components. …”
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Optimization results of test functions for different algorithm improvement points.
Published 2024Subjects: -
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Analytic Gradients for Density Fitting MP2 Using Natural Auxiliary Functions
Published 2024Subjects: -
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Efficient Algorithms for GPU Accelerated Evaluation of the DFT Exchange-Correlation Functional
Published 2025“…Kohn–Sham density functional theory (KS-DFT) has become a cornerstone for studying the electronic structure of molecules and materials. …”