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An exemplar procedure for activity flow modeling based on the direct and shortest paths at a network density of 15%.
Published 2025“…<b>(</b><b>B</b>-<b>C)</b> Mean shortest path length matrices were derived from the weighted and binary FC matrices using Dijkstra’s algorithm. <b>(</b><b>D</b>-<b>F)</b> The predicted activations of 24 task contrasts by activity flow modeling with the routes of FC, SPL<sub>wei</sub>, and SPL<sub>bin</sub>, respectively. …”
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83
Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model
Published 2025“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”
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84
S1 Graphical abstract -
Published 2025“…<div><p>Engineered heart tissues (EHTs) have shown great potential in recapitulating tissue organization, functions, and cell-cell interactions of the human heart <i>in vitro</i>. …”
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85
<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043)
Published 2025“…<p dir="ltr">This dataset contains the data used in the article <a href="https://academic.oup.com/aob/advance-article/doi/10.1093/aob/mcaf043/8074229" rel="noreferrer" target="_blank">"Machine Learning and digital Imaging for Spatiotemporal Monitoring of Stress Dynamics in the clonal plant Carpobrotus edulis: Uncovering a Functional Mosaic</a>", which includes the complete set of collected leaf images, image features (predictors) and response variables used to train machine learning regression algorithms.…”
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86
Presentation of the DySCo framework.
Published 2025“…<p>A: What is dynamic Functional Connectivity: i) We can start from any set of brain recordings, where each signal is referred to a brain location (e.g. fMRI, EEG, intracranial recordings in rodents, and more). ii) “Static” Functional Connectivity (FC) is a matrix where each entry is a time aggregated functional measure of interaction between two regions, for example, the Pearson Correlation Coefficient. iii) Dynamic Functional Connectivity (dFC) is a FC matrix (that can be calculated in different ways, see below) that changes with time, under the assumption that patterns of brain interactions are non-stationary. …”
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87
NanoDB: Research Activity Data Management System
Published 2024“…Cross-Platform Compatibility: Works on Windows, macOS, and Linux. In a Python environment or as an executable. Ease of Implementation: Using the flexibility of the Python framework all the data setup and algorithm can me modified and new functions can be easily added. …”
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88
Code and Data for 'Fabrication and testing of lensed fiber optic probes for distance sensing using common path low coherence interferometry'
Published 2025“…Distance Sensing</p><p dir="ltr">Code and data to demonstrate extracting distance sensing data from A-scans and to generate Fig. 8 using the algorithm described in Fig. 7. Functions to generate distance measurements are in 'distance_sensing_utilities.py' and an example of how to use this on data in the 'data' folder is in 'distance_sensing_example.py', which generates Fig 8. …”
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89
PSO-Optimized Electronic Load Controller with Intelligent Energy Recovery for Self-Excited Induction Generator Based Micro-Hydro Systems
Published 2025“…The dataset includes: (1) <b>PSO configuration parameters</b> - complete algorithm setup with population size (N=20), adaptive inertia weights (0.9→0.4), time-varying cognitive/social coefficients (c1: 2.5→0.5, c2: 0.5→2.5), search space boundaries for all 10 optimization variables, and convergence criteria specifications; (2) <b>Multi-objective fitness function data</b> - detailed weight adaptation formulas, individual objective convergence statistics (voltage: 15.3 iter, frequency: 19.2 iter, THD: 12.8 iter, energy: 23.0 iter), and composite fitness evolution from 0.537 to 0.903 over 50 iterations; (3) <b>Particle dynamics tracking</b> - complete position and velocity trajectories for all 20 particles across optimization dimensions [Kpv, Kiv, Kdv, Kpf, Kif, Kdf, ma, θphase, fc, Ppump,ref], diversity evolution (100%→8%), and exploration/exploitation transition patterns; (4) <b>Real-time implementation metrics</b> - computational requirements (2.6 kB memory, 67% CPU utilization), execution timing (0.83 ms average, 1.2 ms worst-case), and synchronization protocols for 100 Hz optimization loops; and (5) <b>Validation datasets</b> - performance verification across six different load conditions, convergence statistics, and algorithm robustness testing results demonstrating consistent ±1.8% voltage regulation and ±0.9% frequency stability achievements, all provided in structured CSV/JSON formats with comprehensive documentation under CC-BY license.…”
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90
Data Sheet 1_Identification of key biomarkers related to fibrocartilage chondrocytes for osteoarthritis based on bulk, single-cell transcriptomic data.docx
Published 2024“…</p>Results<p>The study identified 545 marker genes associated with FC in OA. GO and KEGG analyses revealed their biological functions; microarray analysis identified 243 DEGs on which functional-enrichment analysis were conducted. …”
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91
Data Sheet 2_Identification of key biomarkers related to fibrocartilage chondrocytes for osteoarthritis based on bulk, single-cell transcriptomic data.csv
Published 2024“…</p>Results<p>The study identified 545 marker genes associated with FC in OA. GO and KEGG analyses revealed their biological functions; microarray analysis identified 243 DEGs on which functional-enrichment analysis were conducted. …”
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92
Brain-in-the-Loop Learning for Intelligent Vehicle Decision-Making
Published 2025“…In this paper, we utilize functional near-infrared spectroscopy (fNIRS) signals as real-time human risk-perception feedback to establish a brain-in-the-loop (BiTL) trained artificial intelligence algorithm for decision-making. …”
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93
Study design and deep-learning model architecture.
Published 2025“…Conv, Convolutional layer; SepConv, Separable convolutional layer; MBConv, Mobile inverted bottleneck convolutional layer (numbers after MBConv indicate layer depth); k3/k5, kernel size 3 or 5; GAP, Global average pooling; FC, Fully connected layer; Swish, Swish activation function; DBP, Diastolic blood pressure, SBP, Systolic blood pressure; HR, Heart rate; DL-IVSS, A deep-learning algorithm leveraging time-series intraoperative vital sign signals; preOp ML, A machine learning model with 103 baseline characteristics.…”
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94
Mechanomics Code - JVT
Published 2025“…The functions were tested respectively in: MATLAB 2018a or youger, Python 3.9.4, R 4.0.3.…”
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95
Table 1_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.docx
Published 2025“…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …”
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96
Table 2_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.docx
Published 2025“…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …”
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97
Table 3_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.xlsx
Published 2025“…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …”
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98
Table 4_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.docx
Published 2025“…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …”
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99
Seamless integration of legacy robotic systems into a self-driving laboratory via NIMO: a case study on liquid handler automation
Published 2025“…We developed NIMO (formerly NIMS-OS, NIMS Orchestration System), an OS explicitly designed to integrate multiple artificial intelligence (AI) algorithms with diverse exploratory objectives. NIMO provides a framework for integrating AI into robotic experimental systems that are controlled by other OS platforms based on both Python and non-Python languages. …”
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100
Predictive Analysis of Mushroom Toxicity Based Exclusively on Their Natural Habitat.
Published 2025“…The analysis was conducted in a Jupyter Notebook environment, using Python and libraries such as Scikit-learn and Pandas. …”