Significantly dysregulated proteins (|log2FC | ≤  0.5, adj. p-value ≤  0.05) in SCA1 (805 proteins). by Aimilia-Christina Vagiona (17584758)

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Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

DataSheet1_The evolution of flexibility and function in the Fc domains of IgM, IgY, and IgE.pdf by Rosaleen A. Calvert (10039787)

“…</p>Results and discussion<p>We analysed the scattering curves in terms of contributions from a pool of variously bent models chosen by a non-negative linear least-squares algorithm and found that the four proteins form a series in which the proportion of acutely bent material increases: IgM-Fc < IgY-Fc < plIgE-Fc < huIgE-Fc. …”

Profile of dysregulated proteins in SCA1 cells containing polyQ inclusions. by Aimilia-Christina Vagiona (17584758)

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The algorithm is designed to identify patterns in the treatment dataset. by Belén Otero-Carrasco (21262360)

A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. by Jose Cleydson F. Silva (8685594)

Isologs, function and residue information of 12 key proteins in MPV replication. by Huaichuan Duan (6458477)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome by Olga Botvinnik (20571431)

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Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

Data of PV, WT, FC, and utilized coefficients. by Obaid Aldosari (19797428)

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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The results of LASSO regression algorithm. by Xue Fu (549661)

The GOR4 and SOPMA algorithm findings. by Ahmad Abdullah Mahdeen (19704401)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)

MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins by Martin J. Fossat (3714079)

Subjects: “…mathematically exact algorithm…”

A Chemoproteomic Approach for System-Wide and Site-Specific Uncovering of Functional Protein N‑Glycosylation by Guoli Wang (59357)

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Components of a critical PPI network involved in SCA1 pathogenesis. by Aimilia-Christina Vagiona (17584758)

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NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”