MOMA compared to MFA-derived estimates, carbon yield efficiencies and CBA co-factor profile comparison across unconstrained, manually curated and experimentally constrained solutio... حسب Laura de Arroyo Garcia (9226096)

"…MOMA ranges were estimated using the wild type solution as a reference and sequentially implementing the single-gene knockouts studied by Long et al. (2019) [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008125#pcbi.1008125.ref046" target="_blank">46</a>], with biomass formation as the objective function. MFA ranges were extracted from a pre-existing dataset (Long et al., 2019), using a Python algorithm to select the minimal and maximal flux ranges.…"

Data_Sheet_1_Exploring changes in depression and radiology-related publications research focus: A bibliometrics and content analysis based on natural language processing.docx حسب Kangtao Wang (9177766)

"…The unsupervised Leuven algorithm was used to build a network to identify relationships between research focus.…"

Mechanomics Code - JVT حسب Carlo Vittorio Cannistraci (5854046)

"…The functions were tested respectively in: MATLAB 2018a or youger, Python 3.9.4, R 4.0.3.…"

Table 1_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.docx حسب Francesco Chiani (2661328)

"…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …"

Table 2_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.docx حسب Francesco Chiani (2661328)

"…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …"

Table 3_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.xlsx حسب Francesco Chiani (2661328)

"…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …"

Table 4_Kefir and healthy aging: revealing thematic gaps through AI-assisted screening and semantic evidence mapping.docx حسب Francesco Chiani (2661328)

"…To overcome this fragmentation, we applied an integrative approach that combines a cutting-edge AI-assisted algorithm for evidence screening with a Python-based semantic clustering pipeline. …"

Seamless integration of legacy robotic systems into a self-driving laboratory via NIMO: a case study on liquid handler automation حسب Ryo Tamura (1957942)

"…We developed NIMO (formerly NIMS-OS, NIMS Orchestration System), an OS explicitly designed to integrate multiple artificial intelligence (AI) algorithms with diverse exploratory objectives. NIMO provides a framework for integrating AI into robotic experimental systems that are controlled by other OS platforms based on both Python and non-Python languages. …"

Predictive Analysis of Mushroom Toxicity Based Exclusively on Their Natural Habitat. حسب Enrico Bertozzi (22461709)

"…The analysis was conducted in a Jupyter Notebook environment, using Python and libraries such as Scikit-learn and Pandas. …"

Least Bridges Graphs حسب Richard Frost (14064363)

"…This toolbox was originally created for analysis of values arising in genetic distance measures. The contained algorithms correct errors in commonly used nearest-neighbor and cluster software that are not designed with distances in mind (e.g. nearest-neighbor topology functions currently found in Python, SPSS, etc).…"

Table1_Enhanced classification and severity prediction of major depressive disorder using acoustic features and machine learning.pdf حسب Lijuan Liang (4277053)

"…We used the Covarep open-source algorithm to extract a total of 1200 high-level statistical functions for each sample. …"

Sudoku Dataset حسب David Towers (12857447)

"…</p> <p>NumPy (.npy) files can be opened through the NumPy Python library, using the `numpy.load()` function by inputting the path to the file into the function as a parameter. …"

The software structure. حسب Moritz Hoffmann (6411821)

"…<p><b>(a)</b> Python user interface: Provides a Python binding to the “C++ user interface” with some additional convenience functionality. …"

DataSheet1_Development of a Multilayer Deep Neural Network Model for Predicting Hourly River Water Temperature From Meteorological Data.docx حسب Reza Abdi (3636907)

"…We trained the LR and DNN algorithms on Google’s TensorFlow model using Keras artificial neural network library on Python. …"

Datasheet1_A Workflow for Rapid Unbiased Quantification of Fibrillar Feature Alignment in Biological Images.zip حسب Stefania Marcotti (5896853)

"…<p>Measuring the organization of the cellular cytoskeleton and the surrounding extracellular matrix (ECM) is currently of wide interest as changes in both local and global alignment can highlight alterations in cellular functions and material properties of the extracellular environment. …"

Known compounds and new lessons: structural and electronic basis of flavonoid-based bioactivities حسب Rohan J. Meshram (6563189)

"…Abbreviations2′HFN-2′</p><p>hydroxy flavonone</p>2D<p>2 dimension</p>3D<p>3 dimension</p>3H7MF<p>3-hydroxy-7-methoxy flavone</p>4′HFN-4′<p>hydroxy flavonone</p>4′MF- 4′<p>methoxy flavone</p>7HFN<p>7-hydroxy flavonone</p>CHARMM<p>Chemistry at Harvard Macromolecular Mechanics</p>COX<p>cyclooxygenase</p>COX-1<p>cyclooxygenase-1</p>COX-2<p>cyclooxygenase-2</p>DM<p>dipole moment</p>DPPH- 2, 2<p>diphenyl-1-picryl hydrazine</p>EA<p>electron affinities</p>EGFR<p>epidermal growth factor receptor</p>E-HOMO<p>Highest occupied molecular orbital energy</p>E-LUMO<p>Lowest unoccupied molecular orbital energy</p>EPA<p>eicosapentaenoic acid</p>FROG2<p>FRee Online druG conformation generation</p>GA<p>Genetic Algorithm</p>GROMACS<p>GROningen MAchine for Chemical Simulations</p>HOMO<p>Highest occupied molecular orbital</p>IP<p>Ionization potential</p>LOMO<p>Lowest unoccupied molecular orbital</p>MD<p>Molecular dynamics</p>MO<p>Molecular orbital</p>NAMD<p>Nanoscale Molecular Dynamics</p>NSAIDs<p>Non-Steroidal Anti Inflammatory Drugs</p>Ns<p>nanoseconds</p>NVE<p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p>PDB-ID<p>Protein Data Bank Identifier</p>PME<p>Particle Mesh Ewald</p>PyRX<p>Python Prescription</p>RMSD<p>Root-Mean-Square Deviation</p>RMSF<p>Root-Mean-Square Fluctuation</p>RLS<p>reactive lipid species</p>ROS<p>Reactive Oxygen Species</p>SASA<p>solvent accessible surface area</p>SMILES<p>simplified molecular-input line-entry system</p>SOR<p>superoxide anion radical</p>UFF<p>Universal force field</p>VEGF<p>vascular endothelial growth factor</p>VEGFR<p>vascular endothelial growth factor receptor</p>VMD<p>Visual molecular dynamics</p><p></p> <p>hydroxy flavonone</p> <p>2 dimension</p> <p>3 dimension</p> <p>3-hydroxy-7-methoxy flavone</p> <p>hydroxy flavonone</p> <p>methoxy flavone</p> <p>7-hydroxy flavonone</p> <p>Chemistry at Harvard Macromolecular Mechanics</p> <p>cyclooxygenase</p> <p>cyclooxygenase-1</p> <p>cyclooxygenase-2</p> <p>dipole moment</p> <p>diphenyl-1-picryl hydrazine</p> <p>electron affinities</p> <p>epidermal growth factor receptor</p> <p>Highest occupied molecular orbital energy</p> <p>Lowest unoccupied molecular orbital energy</p> <p>eicosapentaenoic acid</p> <p>FRee Online druG conformation generation</p> <p>Genetic Algorithm</p> <p>GROningen MAchine for Chemical Simulations</p> <p>Highest occupied molecular orbital</p> <p>Ionization potential</p> <p>Lowest unoccupied molecular orbital</p> <p>Molecular dynamics</p> <p>Molecular orbital</p> <p>Nanoscale Molecular Dynamics</p> <p>Non-Steroidal Anti Inflammatory Drugs</p> <p>nanoseconds</p> <p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p> <p>Protein Data Bank Identifier</p> <p>Particle Mesh Ewald</p> <p>Python Prescription</p> <p>Root-Mean-Square Deviation</p> <p>Root-Mean-Square Fluctuation</p> <p>reactive lipid species</p> <p>Reactive Oxygen Species</p> <p>solvent accessible surface area</p> <p>simplified molecular-input line-entry system</p> <p>superoxide anion radical</p> <p>Universal force field</p> <p>vascular endothelial growth factor</p> <p>vascular endothelial growth factor receptor</p> <p>Visual molecular dynamics</p> <p>Communicated by Ramaswamy H. …"

PySilsub—a toolbox for silent substitution حسب Joel Martin (11864048)

"…Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present <em>PySilSub</em>, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. …"

Table1_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx حسب Jana Biová (11287971)

"…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …"

Table8_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx حسب Jana Biová (11287971)

"…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …"

Table4_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx حسب Jana Biová (11287971)

"…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …"