Supplementary Figure S4 from SpatialDeX Is a Reference-Free Method for Cell-Type Deconvolution of Spatial Transcriptomics Data in Solid Tumors by Xinyi Liu (20493753)

Supplementary Figure S9 from SpatialDeX Is a Reference-Free Method for Cell-Type Deconvolution of Spatial Transcriptomics Data in Solid Tumors by Xinyi Liu (20493753)

Supplementary Figure S3 from SpatialDeX Is a Reference-Free Method for Cell-Type Deconvolution of Spatial Transcriptomics Data in Solid Tumors by Xinyi Liu (20493753)

Optimization outcome for the Rosenbrock function. by Shikun Chen (14625352)

“…The approach leverages gradient information from neural networks to guide SLSQP optimization while maintaining XGBoost’s prediction precision. …”

Optimization outcome for the Rastrigin function. by Shikun Chen (14625352)

“…The approach leverages gradient information from neural networks to guide SLSQP optimization while maintaining XGBoost’s prediction precision. …”

2D Rastrigin function. by Shikun Chen (14625352)

“…The approach leverages gradient information from neural networks to guide SLSQP optimization while maintaining XGBoost’s prediction precision. …”

2D Levy function. by Shikun Chen (14625352)

“…The approach leverages gradient information from neural networks to guide SLSQP optimization while maintaining XGBoost’s prediction precision. …”

2D Rosenbrock function. by Shikun Chen (14625352)

“…The approach leverages gradient information from neural networks to guide SLSQP optimization while maintaining XGBoost’s prediction precision. …”

Optimization outcome for the Levy function. by Shikun Chen (14625352)

“…The approach leverages gradient information from neural networks to guide SLSQP optimization while maintaining XGBoost’s prediction precision. …”

Details of the metaheuristic algorithms. by Junhao Wei (6816803)

“…<div><p>Whale Optimization Algorithm (WOA) is a biologically inspired metaheuristic algorithm with a simple structure and ease of implementation. …”

Parameter settings for algorithms. by Junhao Wei (6816803)

“…<div><p>Whale Optimization Algorithm (WOA) is a biologically inspired metaheuristic algorithm with a simple structure and ease of implementation. …”

Exponentially attenuated sinusoidal function. by Hang Zhao (143592)

“…The Pareto optimal front was generated using MOCOA with the indicators of spectral kurtosis and KL divergence, by which the optimal intrinsic mode functions were obtained. A deep VMD-attention network based on MOCOA was developed for ECG signal classification. …”

A Dataset of Curie and Neel Temperatures auto-generated with ChemDataExtractor and the Snowball Algorithm by Charles Kelly (21712413)

LBQANA python code + Merged Gene Expression Dataset from GSE10810, GSE17907, GSE20711, GSE42568, GSE45827, and GSE61304 for Breast Cancer Biomarker Discovery by M RN (9866504)

“…To address batch effects introduced during the merging process, the Empirical Bayes algorithm from the sva package (via the ComBat function) was applied. …”

PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. by Yuxi Long (11024307)

“…<p>^<b>a</b>PATH⁺ shows comparable or better performance with less overfitting, as evidenced by a smaller slope, with much less increase in RMSEs beyond the training dataset, compared to established binding affinity prediction algorithms spanning a variety of methods. The benchmarked algorithms include physics-based and deep learning algorithms from the famous AutoDock framework (scoring function of AutoDock4 implemented in the AutoDockFR package [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref068" target="_blank">68</a>,<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref077" target="_blank">77</a>], Vinardo [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref069" target="_blank">69</a>], GNINA [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref070" target="_blank">70</a>]), empirical (AA-Score [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref071" target="_blank">71</a>]), knowledge-based (SMoG2016 [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref072" target="_blank">72</a>]), and deep learning-based scoring functions (OnionNet [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref073" target="_blank">73</a>], PLANET [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013216#pcbi.1013216.ref074" target="_blank">74</a>]). …”

Assessment of the level of difficulty of the task from subjects (A) and therapists (B) when using the tablet compared to the paper-based support during the item 18, 19 and 22 compl... by Dominique Vincent-Genod (20552594)

Fitness comparison on test function. by Kejia Liu (5699651)

“…Its restrictions block GEP from successfully handling high-dimensional along with complex optimization problems. …”

Hash function construct used in SKINNY-tk3-hash. by Sonal Arvind Barge (20454967)

“…These devices gather information from their environment and send it across a network. …”

ClaritySpectra: Raman spectra analysis tool by Aaron Celestian (9395696)

“…</li></ul><h3>PEAK FITTING </h3><ul><li>Automated background subtraction using asymmetric least squares fitting</li><li>A new suggested background feature that lets you preview the background that you like best</li><li>Interactive background fitting lets you further tune the background to perfection</li><li>Four choice of peaks: Gaussian, Lorentzian, Pseudo-Voigt, and the new Asymmetric Voigt functions</li><li>Overlapping view of how well the peaks fit with quality metrics</li><li>No need to define regions, the algorithm is smart enough to what a peak looks like.…”

Image 4_Construction of a right ventricular function assessment model in patients undergoing invasive mechanical ventilation based on VExUS grading and the classification and regre... by Jun Gao (203098)

“…Objective<p>Investigate the correlation between right ventricular function ultrasound indicators and the Venous Excess Ultrasound (VExUS) grading system in patients undergoing invasive mechanical ventilation (IMV), and develop a right ventricular function assessment model using VExUS grading and the Classification and Regression Tree (CART) algorithm.…”