Landscape17 by Vlad Carare (22092515)

“…We validated the convergence, grid, and spin settings against published data from rMD17, using the appropriate functional and basis set: PBE/def2-SVP. …”

Table1_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table8_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table4_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table3_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table2_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table7_Natural and artificial selection of multiple alleles revealed through genomic analyses.docx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table5_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

DataSheet1_Natural and artificial selection of multiple alleles revealed through genomic analyses.docx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table6_Natural and artificial selection of multiple alleles revealed through genomic analyses.xlsx by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Table1_Natural and artificial selection of multiple alleles revealed through genomic analyses.DOCX by Jana Biová (11287971)

“…We tested and validated the algorithm and presented the utilization of MADis in a pod pigmentation L1 gene case study with multiple CMs from natural or artificial selection. …”

Predictive Analysis of Mushroom Toxicity Based Exclusively on Their Natural Habitat. by Enrico Bertozzi (22461709)

“…The sample was extracted from the "Mushroom" dataset from the UCI repository, containing 8,124 instances. …”

Known compounds and new lessons: structural and electronic basis of flavonoid-based bioactivities by Rohan J. Meshram (6563189)

“…Abbreviations2′HFN-2′</p><p>hydroxy flavonone</p>2D<p>2 dimension</p>3D<p>3 dimension</p>3H7MF<p>3-hydroxy-7-methoxy flavone</p>4′HFN-4′<p>hydroxy flavonone</p>4′MF- 4′<p>methoxy flavone</p>7HFN<p>7-hydroxy flavonone</p>CHARMM<p>Chemistry at Harvard Macromolecular Mechanics</p>COX<p>cyclooxygenase</p>COX-1<p>cyclooxygenase-1</p>COX-2<p>cyclooxygenase-2</p>DM<p>dipole moment</p>DPPH- 2, 2<p>diphenyl-1-picryl hydrazine</p>EA<p>electron affinities</p>EGFR<p>epidermal growth factor receptor</p>E-HOMO<p>Highest occupied molecular orbital energy</p>E-LUMO<p>Lowest unoccupied molecular orbital energy</p>EPA<p>eicosapentaenoic acid</p>FROG2<p>FRee Online druG conformation generation</p>GA<p>Genetic Algorithm</p>GROMACS<p>GROningen MAchine for Chemical Simulations</p>HOMO<p>Highest occupied molecular orbital</p>IP<p>Ionization potential</p>LOMO<p>Lowest unoccupied molecular orbital</p>MD<p>Molecular dynamics</p>MO<p>Molecular orbital</p>NAMD<p>Nanoscale Molecular Dynamics</p>NSAIDs<p>Non-Steroidal Anti Inflammatory Drugs</p>Ns<p>nanoseconds</p>NVE<p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p>PDB-ID<p>Protein Data Bank Identifier</p>PME<p>Particle Mesh Ewald</p>PyRX<p>Python Prescription</p>RMSD<p>Root-Mean-Square Deviation</p>RMSF<p>Root-Mean-Square Fluctuation</p>RLS<p>reactive lipid species</p>ROS<p>Reactive Oxygen Species</p>SASA<p>solvent accessible surface area</p>SMILES<p>simplified molecular-input line-entry system</p>SOR<p>superoxide anion radical</p>UFF<p>Universal force field</p>VEGF<p>vascular endothelial growth factor</p>VEGFR<p>vascular endothelial growth factor receptor</p>VMD<p>Visual molecular dynamics</p><p></p> <p>hydroxy flavonone</p> <p>2 dimension</p> <p>3 dimension</p> <p>3-hydroxy-7-methoxy flavone</p> <p>hydroxy flavonone</p> <p>methoxy flavone</p> <p>7-hydroxy flavonone</p> <p>Chemistry at Harvard Macromolecular Mechanics</p> <p>cyclooxygenase</p> <p>cyclooxygenase-1</p> <p>cyclooxygenase-2</p> <p>dipole moment</p> <p>diphenyl-1-picryl hydrazine</p> <p>electron affinities</p> <p>epidermal growth factor receptor</p> <p>Highest occupied molecular orbital energy</p> <p>Lowest unoccupied molecular orbital energy</p> <p>eicosapentaenoic acid</p> <p>FRee Online druG conformation generation</p> <p>Genetic Algorithm</p> <p>GROningen MAchine for Chemical Simulations</p> <p>Highest occupied molecular orbital</p> <p>Ionization potential</p> <p>Lowest unoccupied molecular orbital</p> <p>Molecular dynamics</p> <p>Molecular orbital</p> <p>Nanoscale Molecular Dynamics</p> <p>Non-Steroidal Anti Inflammatory Drugs</p> <p>nanoseconds</p> <p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p> <p>Protein Data Bank Identifier</p> <p>Particle Mesh Ewald</p> <p>Python Prescription</p> <p>Root-Mean-Square Deviation</p> <p>Root-Mean-Square Fluctuation</p> <p>reactive lipid species</p> <p>Reactive Oxygen Species</p> <p>solvent accessible surface area</p> <p>simplified molecular-input line-entry system</p> <p>superoxide anion radical</p> <p>Universal force field</p> <p>vascular endothelial growth factor</p> <p>vascular endothelial growth factor receptor</p> <p>Visual molecular dynamics</p> <p>Communicated by Ramaswamy H. …”

Spatiotemporal Soil Erosion Dataset for the Yarlung Tsangpo River Basin (1990–2100) by peng xin (21382394)

“…Bias correction was conducted using a 25-year baseline (1990–2014), with adjustments made monthly to correct for seasonal biases. The corrected bias functions were then applied to adjust the years (2020–2100) of daily rainfall data using the "ibicus" package, an open-source Python tool for bias adjustment and climate model evaluation. …”

Sudoku Dataset by David Towers (12857447)

“…</p> <p>NumPy (.npy) files can be opened through the NumPy Python library, using the `numpy.load()` function by inputting the path to the file into the function as a parameter. …”

The software structure. by Moritz Hoffmann (6411821)

“…<p><b>(a)</b> Python user interface: Provides a Python binding to the “C++ user interface” with some additional convenience functionality. …”

Decoding fairness motivations - repository by Sebastian Speer (6489207)

“…All analysis were conducted in Python 2.7.</div><div><br></div><div><b>Behavioral Data:</b><br></div><div><br></div><div><u>Files:</u> </div><div><br></div><div><i>DifffereceOffers.csv </i>- Offers made by participants in Study 1</div><div><i>Diffs_W.csv</i> - Offers made by participants in Study 2</div><div><br></div><div><i>Individual-differences-in-offers2.png</i> - Plot of individual differences as illustrated in the paper</div><div><i>Individual-differences-MeanOffers.png </i>- Individual differences in mean offers in both games as illustrated in the Appendix</div><div><i>SocialvsNonSocial2.png </i>- Difference in Offers between Selfish and strategic players when playing against humans and computers</div><div><br></div><div>Behavioral Data, specfically Ultimatum Game and Dictator Game Offers and Plots resulting from behavioral analysis reported in the following paper:</div><div><br></div><div>S.P.H. …”

Presentation_1_NeuroEditor: a tool to edit and visualize neuronal morphologies.pdf by Ivan Velasco (9463019)

“…Moreover, NeuroEditor can be easily extended by users, who can program their own algorithms in Python and run them within the tool. Last, this paper includes an example showing how users can easily define a customized workflow by applying a sequence of editing operations. …”

PySilsub—a toolbox for silent substitution by Joel Martin (11864048)

“…The software is registered with the <em>Python Package Index</em> (pip install pysilsub) and includes example data sets from various multi-primary systems. …”

Investigation of cardiac mechanics and mechanical circulatory support therapies in peripartum cardiomyopathy using machine learning and patient-specific computational modelling by Juliet Nagawa (17333779)

“…</li></ul><p dir="ltr"> <b>ANN.zip</b></p><ul><li>Matlab and Python programs used to develop machine learning algorithms and developed machine learning models.…”