Efficient algorithms to discover alterations with complementary functional association in cancer by Rebecca Sarto Basso (6728921)

“…Among such patterns, <i>mutual exclusivity</i> has been employed by several recent methods that have shown its effectiveness in characterizing gene sets associated to cancer. Mutual exclusivity arises because of the complementarity, at the functional level, of alterations in genes which are part of a group (e.g., a <i>pathway</i>) performing a given function. …”

Comparison between algorithm and expert cell counting. by Adam L. Tyson (10892822)

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Algorithm framework. by Zongjin Li (38031)

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Overview of the Cell2Spatial algorithm. by Huamei Li (8815955)

Subjects: “…Cell Biology…”

The eVIP algorithm uses RNA-seq data to predict the function of somatic mutations. by Alexis M. Thornton (11068403)

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MSVM-RFE algorithm for screening key genes. by Ya xi Zhu (11624730)

Performance of ENQUIRE’s gene normalization algorithm. by Luca Musella (19986312)

Cell-type marker genes and functional enrichment analysis. by Hailin Li (453832)

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Statistics table for ED algorithm and SNP-index algorithm association regions. by Jiaqi Li (220961)

UNCOVER: Functional complementarity of alterations discovery. by Rebecca Sarto Basso (6728921)

WGCNA and machine learning algorithms. by Shushu Wang (6870191)

The common genes and their functional analysis. by Bing Yang (142278)

CIBERSORT algorithm calculates immune infiltration of 22 types of immune cells. by Lixia Chen (614030)

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The results of LASSO regression algorithm. by Xue Fu (549661)

Functional enrichment of gene clusters identified in up-regulated drought tolerant network (uDTN) using MCL algorithm. by Sanchari Sircar (198485)

Algorithm performance compared to mean of expert manual counts with varying axial sampling. by Adam L. Tyson (10892822)

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Integration of three machine learning algorithms to characterize lipid metabolism-associated hub genes in sepsis and atrial fibrillation. by Changze Ou (22806374)

The gene set related to the “Cytotoxicity” and “Progenitor exhaustion” function of T cells. by Yanfeng Xue (465345)

Subjects: “…Cell Biology…”

Sub-model-specific gene sets with functional annotations and weights. by Josh L. Espinoza (10492448)

Functional enrichment of 17 gene clusters identified in down-regulated drought tolerant network (dDTN) using MCL algorithm. by Sanchari Sircar (198485)