Listed python codes of our algorithm with explanations (Python 3.9 recommended). by Takayuki Niizato (162226)

Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…<p>A) Resulting cluster inertia from applying the k-means algorithm described in the methods to empirical averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

Adaptive H-REMD simulation algorithm. by Danial Pourjafar-Dehkordi (7165523)

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…For a RDKit molecule, it provides (i) a PNG binary string with an image of the molecule with color-highlighted functional groups; (ii) a list of sets of atom indices (idx), each set corresponding to a functional group; (iii) a list of pseudo-SMILES canonicalized strings for the full functional groups; and (iv) a list of RDKit labeled mol objects, one for each full functional group. …”

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Python-based Monte Carlo Simulation Tool by Yangfan Jiang (9372782)

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

Subjects:

Efficient algorithms to discover alterations with complementary functional association in cancer by Rebecca Sarto Basso (6728921)

“…We provide analytic evidence of the effectiveness of UNCOVER in finding high-quality solutions and show experimentally that UNCOVER finds sets of alterations significantly associated with functional targets in a variety of scenarios. In particular, we show that our algorithms find sets which are better than the ones obtained by the state-of-the-art method, even when sets are evaluated using the statistical score employed by the latter. …”

“trend+var” algorithm. by Roman Olson (6577004)

Phosphorylation-specific motifs identified by the Motif-X algorithm. by Xiaoxiao Qin (9247765)

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Subjects: “…Cell Biology…”

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Subjects: “…Cell Biology…”

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Subjects: “…Cell Biology…”

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Subjects: “…Cell Biology…”

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Subjects: “…Cell Biology…”

Algorithm pseudocode. by Cheng-jie Chen (22272090)

Subjects: “…Cell Biology…”

Supplementary file 1_Earthworm optimization algorithm for extracting parameters for solar cells and photovoltaic modules.docx by Fatima Wardi (22052360)

“…<p>In this paper, we deal with the use of the earthworm optimization algorithm (EOA) in foraging to estimate and extract the intrinsic electrical parameters of single-, double-, and triple-diode solar cells and photovoltaic modules across different technologies. …”

Average quality scores of the models of the analysis set as a function of the <i>w</i>_<i>SP</i> with which the DOPE potential has been included in the objective function... by Giacomo Janson (8138517)

Algorithm testing. by Ziad M. Ali (12516532)

Subjects: