BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”

Flowchart of the algorithm. by Xiaowen Zhang (83669)

Subjects:

The parameters of algorithms. by Le Huu Binh (18340233)

Subjects:

Standard benchmark functions used for the experimentation of EOSA and other similar optimization algorithms. by Tehnan I. A. Mohamed (16846175)

Critical values of membership functions learned from the study cohort by the algorithm. by Yufeng Zhang (195768)

Comparison of scores obtained by our interpenetration and scoring algorithm (ISA) and ROSETTA for a subset of structures. by Kevin Sawade (16726527)

“…However, our algorithm was 1000 times faster than pyROSETTA (both algorithms have been parallelized on a per-structure basis using the Python package joblib [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010531#pcbi.1010531.ref069" target="_blank">69</a>]).…”

Convergence curve of functions <i>f</i>_<i>1</i><i>-f</i>_<i>10</i> in D = 10. by Yu Li (183836)

Probably pathogenic variants (algorithms). by Felipe Fidalgo (642532)

Compare the test functions. by Yanqiu Li (683621)

Computational time of each algorithm—Part I. by Xuan Chen (158617)

Hyperparameter settings of the algorithm 1. by Jin Xu (31283)

“…Therefore, this paper presents a novel adaptive control structure for the Twin Delayed Deep Deterministic Policy Gradient algorithm, which is based on a reference trajectory model (TD3-RTM). …”

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Restoration process via Algorithm 1. by Dilber Uzun Ozsahin (18320075)

Algorithm implemented using SQL with fulltext search feature. by Kathleen M. Akgün (3697702)

Convergence of the numerical solution of the non-linear equation system through the iterations <i>p</i> using the Newton-Raphson algorithm and the Levenberg–Marquardt algorithm. by Martin Dodek (20623832)

Definitions of global parameters used for constructing random ecosystems. by Robert Marsland (8616483)

WST results for LLSKSO and other algorithms on benchmark test functions. (<i>α</i> = 0.05). by Ruyi Dong (9038174)

“…<p>WST results for LLSKSO and other algorithms on benchmark test functions. (<i>α</i> = 0.05).…”