PapD sequences redesigned by pMPNN-AD are enriched in basic residues at L107. by Lu Hong (399882)

Subjects:

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

A comparative workflow of all six functional software tools producing GO term lists from the same dataset. by Ray Sajulga (5721518)

Functional annotation and PPI analysis of turquoise module genes. by Minhui Xi (20114243)

Frequency of binding site usage as a function of binding site length. by Virgile Andreani (17087764)

Subjects: “…unlike approximation algorithms…”

Functional prediction of SOD1 protein variants. by Gabriel Rodrigues Coutinho Pereira (6612542)

“…(A) Functional prediction from the variant A2V to L39V. …”

Comparison of algorithms in two cases. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

Flow of the NSGA-II algorithm. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

An average number of beta turns in a loop (isolated GGG included in the loops) as a function of loop length. by Maxim Shapovalov (365188)

An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

Results of DE algorithms with our scheme and original DE algorithms when function dimensionality is set 100. by Haiming Du (6691646)

Results of DE algorithms with our scheme and original DE algorithms when function dimensionality is set 30. by Haiming Du (6691646)

Results of DE algorithms with our scheme and original DE algorithms when function dimensionality is set 50. by Haiming Du (6691646)

Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements by Pascal Wang (10130612)

“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”

Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

Select disease-linked mutations in the gene encoding ROMK destabilize the protein. by Nga H. Nguyen (2075920)

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”

The optimal solution set of NYN by using different algorithms. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

The optimal solution set of HN by using different algorithms. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”