Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy by Yujin Wu (2901128)

Subjects:

Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy by Yujin Wu (2901128)

Subjects:

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Listed python codes of our algorithm with explanations (Python 3.9 recommended). by Takayuki Niizato (162226)

Algorithmic assessment reveals functional implications of GABRD gene variants linked to idiopathic generalized epilepsy by Ayla Arslan (17943365)

“…</p> <p>The study identifies specific variants (L111R, R114C, D123N, G150S, and L243P) in the coding region of the GABRD gene, which are predicted as deleterious by multiple algorithms. …”

Multimodal reference functions. by Ruiyu Zhan (21602031)

“…We performed comparative analyses against other methodologies across various functions and public datasets to assess their effectiveness. …”

C-code for calculation of the temporal correlation function dependent on time. by Aleksey Valkov (9251744)

Reward function related parameters. by Honglei Pang (22693724)

Subjects:

Practical rules for summing the series of the Tweedie probability density function with high-precision arithmetic by NELSON L. DIAS (8078003)

“…With these practical rules, simple summation algorithms provide sufficiently robust results for the calculation of the density function and its definite integrals. …”

The convergence curves of the test functions. by Ruiyu Zhan (21602031)

“…We performed comparative analyses against other methodologies across various functions and public datasets to assess their effectiveness. …”

Single-peaked reference functions. by Ruiyu Zhan (21602031)

“…We performed comparative analyses against other methodologies across various functions and public datasets to assess their effectiveness. …”

Algorithm for generating virtual patients. by Adrianne L. Jenner (11133854)

“…<b>4)</b> Optimizing the objective function provides a parameter set for which the patient response to SARS-CoV-2 will be within the physiological ranges. …”

Predictive Mixing for Density Functional Theory (and Other Fixed-Point Problems) by L. D. Marks (1949689)

“…Density functional theory calculations use a significant fraction of current supercomputing time. …”

Python-based Monte Carlo Simulation Tool by Yangfan Jiang (9372782)

Procedure of the DCT-based EIT algorithm. by Rongqing Chen (249906)

“…Structural priors introduced in the DCT-based approach are of two categories in terms of different levels of information included: a contour prior only differentiates lung and non-lung region, while a detail prior includes information, such as atelectasis, within the lung area. To demonstrate the increased interpretability of the EIT image through structural prior in the DCT-based approach, the DCT-based reconstructions were compared with reconstructions from a widely applied one-step Gauss-Newton solver with background prior and from the advanced GREIT algorithm. …”

Test results of multimodal benchmark functions. by Ruiyu Zhan (21602031)

“…We performed comparative analyses against other methodologies across various functions and public datasets to assess their effectiveness. …”

Fixed-dimensional multimodal reference functions. by Ruiyu Zhan (21602031)

“…We performed comparative analyses against other methodologies across various functions and public datasets to assess their effectiveness. …”

Test results of multimodal benchmark functions. by Ruiyu Zhan (21602031)

“…We performed comparative analyses against other methodologies across various functions and public datasets to assess their effectiveness. …”

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

Comparison of algorithms in two cases. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”