Expression vs genomics for predicting dependencies حسب Broad DepMap (5514062)

"…If you are interested in trying machine learning, the files Features.hdf5 and Target.hdf5 contain the data munged in a convenient form for standard supervised machine learning algorithms.…"

Data Sheet 1_Machine learning models integrating intracranial artery calcification to predict outcomes of mechanical thrombectomy.pdf حسب Guangzong Li (16696443)

"…Eleven ML algorithms were trained and validated using Python, and external validation and performance evaluations were conducted. …"

ClaritySpectra: Raman spectra analysis tool حسب Aaron Celestian (9395696)

GridScopeRodents: High-Resolution Global Typical Rodents Distribution Projections from 2021 to 2100 under Diverse SSP-RCP Scenarios حسب Yang Lan (20927512)

"…</p><p dir="ltr">All data are stored in GeoTIFF (.tif) format and can be accessed and processed using ArcGIS, ENVI, R, and Python. Each GeoTIFF file contains grid-based predictions of habitat suitability, with values ranging from 0 to 1. …"

PyPEFAn Integrated Framework for Data-Driven Protein Engineering حسب Niklas E. Siedhoff (11133851)

"…Data-driven strategies are gaining increased attention in protein engineering due to recent advances in access to large experimental databanks of proteins, next-generation sequencing (NGS), high-throughput screening (HTS) methods, and the development of artificial intelligence algorithms. However, the reliable prediction of beneficial amino acid substitutions, their combination, and the effect on functional properties remain the most significant challenges in protein engineering, which is applied to develop proteins and enzymes for biocatalysis, biomedicine, and life sciences. …"

<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043) حسب Erola Fenollosa (20977421)

"…</li><li>The dataframe of extracted colour features from all leaf images and lab variables (ecophysiological predictors and variables to be predicted)</li><li>Set of scripts used for image pre-processing, features extraction, data analytsis, visualization and Machine learning algorithms training, using ImageJ, R and Python.…"

Predictive Analysis of Mushroom Toxicity Based Exclusively on Their Natural Habitat. حسب Enrico Bertozzi (22461709)

"…The analysis was conducted in a Jupyter Notebook environment, using Python and libraries such as Scikit-learn and Pandas. …"

Data_Sheet_1_MCIC: Automated Identification of Cellulases From Metagenomic Data and Characterization Based on Temperature and pH Dependence.docx حسب Mehdi Foroozandeh Shahraki (9555317)

"…MCIC is freely available as a python package and standalone toolkit for Windows and Linux-based operating systems with several functions to facilitate the screening and thermal and pH dependence prediction of cellulases.…"

DataSheet1_Development of a Multilayer Deep Neural Network Model for Predicting Hourly River Water Temperature From Meteorological Data.docx حسب Reza Abdi (3636907)

"…However, in most rivers, there are not enough water temperature measurements to characterize thermal regimes and evaluate its effect on ecosystem functions such as fish migration. To aid in river restoration, machine learning-based algorithms were developed to predict hourly river water temperature. …"

An Ecological Benchmark of Photo Editing Software: A Comparative Analysis of Local vs. Cloud Workflows حسب Pierre-Alexis DELAROCHE (22092572)

"…Performance Profiling Algorithms Energy Measurement Methodology # Pseudo-algorithmic representation of measurement protocol def capture_energy_metrics(workflow_type: WorkflowEnum, asset_vector: List[PhotoAsset]) -> EnergyProfile: baseline_power = sample_idle_power_draw(duration=30) with PowerMonitoringContext() as pmc: start_timestamp = rdtsc() # Read time-stamp counter if workflow_type == WorkflowEnum.LOCAL: result = execute_local_pipeline(asset_vector) elif workflow_type == WorkflowEnum.CLOUD: result = execute_cloud_pipeline(asset_vector) end_timestamp = rdtsc() energy_profile = EnergyProfile( duration=cycles_to_seconds(end_timestamp - start_timestamp), peak_power=pmc.get_peak_consumption(), average_power=pmc.get_mean_consumption(), total_energy=integrate_power_curve(pmc.get_power_trace()) ) return energy_profile Statistical Analysis Framework Our analytical pipeline employs advanced statistical methodologies including: Variance Decomposition: ANOVA with nested factors for hardware configuration effects Regression Analysis: Generalized Linear Models (GLM) with log-link functions for energy modeling Temporal Analysis: Fourier transform-based frequency domain analysis of power consumption patterns Cluster Analysis: K-means clustering with Euclidean distance metrics for workflow classification Data Validation and Quality Assurance Measurement Uncertainty Quantification All energy measurements incorporate systematic and random error propagation analysis: Instrument Precision: ±0.1W for CPU power, ±0.5W for GPU power Temporal Resolution: 1ms sampling with Nyquist frequency considerations Calibration Protocol: NIST-traceable power standards with periodic recalibration Environmental Controls: Temperature-compensated measurements in climate-controlled facility Outlier Detection Algorithms Statistical outliers are identified using the Interquartile Range (IQR) method with Tukey's fence criteria (Q₁ - 1.5×IQR, Q₃ + 1.5×IQR). …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>raw_data/glasgow_open_built/glasgow_open_built_areas.shp</code> - Grid defining sampling points</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python svi_module/get_svi_data.py<br></pre></pre><p dir="ltr"><b>Output:</b></p><ul><li><code>svi_module/svi_data/svi_info.csv</code> - Image metadata (IDs, coordinates)</li><li><code>svi_module/svi_data/images/</code> - Downloaded street view images</li></ul><h3>Step 2: Predict Perceptions</h3><p dir="ltr">Use pre-trained deep learning models to predict perceptual qualities (safety, beauty, liveliness, etc.) from street view images.…"

Code حسب Baoqiang Chen (21099509)

"…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …"

Core data حسب Baoqiang Chen (21099509)

"…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …"