Pipeline of the interactor algorithm. حسب Jose Cleydson F. Silva (8685594)

(a-b) The LASSO algorithm was used for hyperparameter tuning and identification of the important predictive features. حسب Devi Soorya Narayana Sasikumar (22331743)

الموضوعات:

Explained variance ration of the PCA algorithm. حسب Abeer Aljohani (18497914)

الموضوعات:

Optimization Performance Comparison of Metaheuristic Algorithms. حسب Xie Qiu (13243770)

Code snippets to add user-specific custom functionality in PyNoetic. حسب Gursimran Singh (575288)

الموضوعات:

Functional enrichment analyses of Co-genes. حسب Qingcong Zheng (11169094)

Modular architecture design of PyNoetic showing all its constituent functions. حسب Gursimran Singh (575288)

الموضوعات:

Comparison of PyNoetic’s functionality for BCI design with other existing state-of-the-art frameworks. حسب Gursimran Singh (575288)

الموضوعات:

Supplemental files to the study "Limitations of Current Machine-Learning Models in Predicting Enzymatic Functions for Uncharacterized Proteins" حسب Valerie de Crecy-Lagard (12823436)

"…This large knowledge shortfall is one of the final frontiers of biology. Machine-Learning (ML) approaches are enticing, with early successes demonstrating the ability to propagate functional knowledge from experimentally characterized proteins. …"

Overview of functionality supported by PyNoetic and its various modules, including the live analysis and programmable flowchart. حسب Gursimran Singh (575288)

الموضوعات:

Unsupervised Machine Learning for Differential Analysis in Proteomics حسب Guanyang Xu (22379531)

الموضوعات:

WGCNA and machine learning algorithms. حسب Shushu Wang (6870191)

Features of 13 pSRGs obtained by machine learning methods. حسب Xihao Shen (20347942)

الموضوعات:

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results حسب Se-Hee Jo (20554623)

"…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …"

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer حسب Morgan Najera (21540776)

"…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…"

A framework for improving localisation prediction algorithms. حسب Sven B. Gould (12237287)

"…One can expect that the combination of multi-dimensional parameters from evolutionary biology, cell biology and molecular biology on evolutionary diverse species will significantly improve the next generation of machine leaning algorithms that serve localisation (and function) predictions.…"

PyNoetic’s classification module supports a range of popular and widely used ML classification models with just a single line of function call. حسب Gursimran Singh (575288)

الموضوعات:

The results of gene ontology analysis of the hub genes, including (a) biological process, (b) cellular components, (c) molecular functions, and (d) pathway analysis. حسب Devi Soorya Narayana Sasikumar (22331743)

الموضوعات:

High-Coverage Stereoproteome Mapping Uncovers Pervasive Protein Stereoisomerization Associated with Neurodegeneration حسب Xia Xu (83500)

الموضوعات:

High-Coverage Stereoproteome Mapping Uncovers Pervasive Protein Stereoisomerization Associated with Neurodegeneration حسب Xia Xu (83500)

الموضوعات: