Daniel Jaschke - Talk "Quantum computing @ INFN" (2024) by Daniel Jaschke (17341783)

“…This is a ubiquitous problem in quantum many-body physics, which we solve using tensor network methods. This approximate state-of-the-art method compresses quantum correlations which is key to overcoming the exponential growth of the Hilbert space as a function of the number of particles. …”

Data Sheet 1_Gene-level connections between anxiety disorders, ADHD, and head and neck cancer: insights from a computational biology approach.zip by Meng Lian (502465)

“…An AI-driven computational process constructed a gene-disease relationship table using the Adjusted Binomial Method Algorithm (ABMA) to evaluate association reliability. …”

Table 4_SZBC-AI4TCM: a comprehensive web-based computing platform for traditional Chinese medicine research and development.xlsx by Jidong Lang (802830)

“…Featuring an intuitive visual interface and hardware–software acceleration, SZBC-AI4TCM allows researchers without computational backgrounds to conduct comprehensive and accurate analyses efficiently. By using the TCM research in Alzheimer’s disease as an example, we showcase its functionalities, operational methods, and analytical capabilities.…”

Table 5_SZBC-AI4TCM: a comprehensive web-based computing platform for traditional Chinese medicine research and development.xlsx by Jidong Lang (802830)

“…Featuring an intuitive visual interface and hardware–software acceleration, SZBC-AI4TCM allows researchers without computational backgrounds to conduct comprehensive and accurate analyses efficiently. By using the TCM research in Alzheimer’s disease as an example, we showcase its functionalities, operational methods, and analytical capabilities.…”

Table 2_SZBC-AI4TCM: a comprehensive web-based computing platform for traditional Chinese medicine research and development.xlsx by Jidong Lang (802830)

“…Featuring an intuitive visual interface and hardware–software acceleration, SZBC-AI4TCM allows researchers without computational backgrounds to conduct comprehensive and accurate analyses efficiently. By using the TCM research in Alzheimer’s disease as an example, we showcase its functionalities, operational methods, and analytical capabilities.…”

Table 3_SZBC-AI4TCM: a comprehensive web-based computing platform for traditional Chinese medicine research and development.xlsx by Jidong Lang (802830)

“…Featuring an intuitive visual interface and hardware–software acceleration, SZBC-AI4TCM allows researchers without computational backgrounds to conduct comprehensive and accurate analyses efficiently. By using the TCM research in Alzheimer’s disease as an example, we showcase its functionalities, operational methods, and analytical capabilities.…”

Table 1_SZBC-AI4TCM: a comprehensive web-based computing platform for traditional Chinese medicine research and development.xlsx by Jidong Lang (802830)

“…Featuring an intuitive visual interface and hardware–software acceleration, SZBC-AI4TCM allows researchers without computational backgrounds to conduct comprehensive and accurate analyses efficiently. By using the TCM research in Alzheimer’s disease as an example, we showcase its functionalities, operational methods, and analytical capabilities.…”

Table1_Comprehensive analysis of IRF8-related genes and immune characteristics in lupus nephritis.DOC by Zhibin Yu (1450102)

“…Objective: We aimed to explore gene networks and potential biomarkers for LN by analyzing the GSE32591 and GSE113342 datasets from the Gene Expression Omnibus database, focusing on IRF8 and IRF8-related genes.</p>Methods<p>We used differential expression analysis, functional enrichment, protein-protein interaction (PPI) network construction, and the CIBERSORT algorithm for immune infiltration assessment. …”

DataSheet1_Comprehensive analysis of IRF8-related genes and immune characteristics in lupus nephritis.ZIP by Zhibin Yu (1450102)

“…Objective: We aimed to explore gene networks and potential biomarkers for LN by analyzing the GSE32591 and GSE113342 datasets from the Gene Expression Omnibus database, focusing on IRF8 and IRF8-related genes.</p>Methods<p>We used differential expression analysis, functional enrichment, protein-protein interaction (PPI) network construction, and the CIBERSORT algorithm for immune infiltration assessment. …”

Graphical Abstract. by Michele Gentili (19865208)

“…Given a source of biological information, such as a PPI network or set of functional annotations, for every gene i and j (g_i,g_j) we extract the gene specific regularization vector <i>λ</i>_{<i>i</i>,<i>j</i>}, that contains the distance between gene g_i and g_j to all of the other genes, in our case the inverse of the personalized PageRank algorithm (more details in <b><a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011079#pcbi.1011079.s001" target="_blank">S1 Text</a></b>). …”

Image 2_Single-cell sequencing reveals the role of aggrephagy-related patterns in tumor microenvironment, prognosis and immunotherapy in endometrial cancer.jpeg by Yuquan Yuan (10570747)

“…</p>Methods<p>A total of 36,227 single cells from single-cell RNA-seq data derived from five EC tumor samples were comprehensively analyzed using a nonnegative matrix factorization (NMF) algorithm for 44 aggrephagy-related genes. …”

Table1_Deletion of Mgat2 in spermatogonia blocks spermatogenesis.xlsx by Mohd Shamoon Asmat (19700998)

“…In addition, RNA-seq analysis at 15 days after birth revealed a unique transcriptomic landscape in Mgat2[−/−] germ cells with genes required for sperm formation and functions being most downregulated. Bioinformatic analyses using the ingenuity pathway analysis (IPA) algorithm identified ERK and AKT as central activities. …”

Image 1_Single-cell sequencing reveals the role of aggrephagy-related patterns in tumor microenvironment, prognosis and immunotherapy in endometrial cancer.jpeg by Yuquan Yuan (10570747)

“…</p>Methods<p>A total of 36,227 single cells from single-cell RNA-seq data derived from five EC tumor samples were comprehensively analyzed using a nonnegative matrix factorization (NMF) algorithm for 44 aggrephagy-related genes. …”

Image 3_Single-cell sequencing reveals the role of aggrephagy-related patterns in tumor microenvironment, prognosis and immunotherapy in endometrial cancer.jpeg by Yuquan Yuan (10570747)

“…</p>Methods<p>A total of 36,227 single cells from single-cell RNA-seq data derived from five EC tumor samples were comprehensively analyzed using a nonnegative matrix factorization (NMF) algorithm for 44 aggrephagy-related genes. …”

Table 1_Single-cell sequencing reveals the role of aggrephagy-related patterns in tumor microenvironment, prognosis and immunotherapy in endometrial cancer.docx by Yuquan Yuan (10570747)

“…</p>Methods<p>A total of 36,227 single cells from single-cell RNA-seq data derived from five EC tumor samples were comprehensively analyzed using a nonnegative matrix factorization (NMF) algorithm for 44 aggrephagy-related genes. …”

Image 4_Single-cell sequencing reveals the role of aggrephagy-related patterns in tumor microenvironment, prognosis and immunotherapy in endometrial cancer.jpeg by Yuquan Yuan (10570747)

“…</p>Methods<p>A total of 36,227 single cells from single-cell RNA-seq data derived from five EC tumor samples were comprehensively analyzed using a nonnegative matrix factorization (NMF) algorithm for 44 aggrephagy-related genes. …”

Table 2_Single-cell sequencing reveals the role of aggrephagy-related patterns in tumor microenvironment, prognosis and immunotherapy in endometrial cancer.docx by Yuquan Yuan (10570747)

“…</p>Methods<p>A total of 36,227 single cells from single-cell RNA-seq data derived from five EC tumor samples were comprehensively analyzed using a nonnegative matrix factorization (NMF) algorithm for 44 aggrephagy-related genes. …”

DataSheet1_Deletion of Mgat2 in spermatogonia blocks spermatogenesis.pdf by Mohd Shamoon Asmat (19700998)

“…In addition, RNA-seq analysis at 15 days after birth revealed a unique transcriptomic landscape in Mgat2[−/−] germ cells with genes required for sperm formation and functions being most downregulated. Bioinformatic analyses using the ingenuity pathway analysis (IPA) algorithm identified ERK and AKT as central activities. …”

Image 1_Targeting a distinct binding pocket in the pregnane X receptor with natural agonist TRLW-2 ameliorates murine ulcerative colitis.tif by Shangrui Rao (18189241)

“…</p>Methods<p>A distinct binding pocket (Pocket 1–5) within the PXR ligand-binding domain was identified using a multi-algorithm computational approach (SiteMap, Fpocket, Prank, CASTpFold). …”

Image 2_Targeting a distinct binding pocket in the pregnane X receptor with natural agonist TRLW-2 ameliorates murine ulcerative colitis.tif by Shangrui Rao (18189241)

“…</p>Methods<p>A distinct binding pocket (Pocket 1–5) within the PXR ligand-binding domain was identified using a multi-algorithm computational approach (SiteMap, Fpocket, Prank, CASTpFold). …”