Data Sheet 3_Robust reference gene selection in Norway spruce: essential for real-time quantitative PCR across different tissue, stress and developmental conditions.docx by Vivek Vikram Singh (16010390)

“…We evaluated the stability of 15 candidate reference genes and assessed their expression stability using five statistical algorithms (ΔCt, geNorm, NormFinder, BestKeeper, and RefFinder). …”

Data Sheet 1_Robust reference gene selection in Norway spruce: essential for real-time quantitative PCR across different tissue, stress and developmental conditions.docx by Vivek Vikram Singh (16010390)

“…We evaluated the stability of 15 candidate reference genes and assessed their expression stability using five statistical algorithms (ΔCt, geNorm, NormFinder, BestKeeper, and RefFinder). …”

Data Sheet 4_Robust reference gene selection in Norway spruce: essential for real-time quantitative PCR across different tissue, stress and developmental conditions.xlsx by Vivek Vikram Singh (16010390)

“…We evaluated the stability of 15 candidate reference genes and assessed their expression stability using five statistical algorithms (ΔCt, geNorm, NormFinder, BestKeeper, and RefFinder). …”

<b>Supplementary Materials for:</b> <b>Pan-Cancer Analysis Reveals LncRNA CDKN2B-AS1 as an Immune-Related Biomarker Validated in LIHC and ACC</b> by Dandan Lin (18192946)

“…S8-S10: Comprehensive analysis of the relationship between CDKN2B-AS1 expression and the infiltration levels of diverse immune cells using TIMER2.0 and CIBERSORT algorithms.</li><li>Fig. …”

AP-2α 相关研究 by Ya-Hong Wang (21080642)

“…The KEGG database was used to classify genes based on their involvement in metabolic pathways or functional categories. …”

Patentability of 3D bioprinting technologies by Phoebe Li (4463947)

“…</p><p dir="ltr">(5) <i>In vitro</i> bioprinted (functional or cosmetic) human organs may be patentable.…”

Table 1_Identification and verification of biomarkers associated with neutrophils in acute myocardial infarction: integrated analysis of bulk RNA-seq, expression quantitative trait... by Guoqing Liu (93712)

“…Hub genes were screened using the least absolute shrinkage and selection operator (LASSO) and random forest (RF) algorithms. …”

Data Sheet 1_Identification and verification of biomarkers associated with neutrophils in acute myocardial infarction: integrated analysis of bulk RNA-seq, expression quantitative... by Guoqing Liu (93712)

“…Hub genes were screened using the least absolute shrinkage and selection operator (LASSO) and random forest (RF) algorithms. …”

Data Sheet 1_Differential neuropilin isoform expressions highlight plasticity in macrophages in the heterogenous TME through in-silico profiling.docx by Hyun-Jee Han (20858765)

“…Datasets were processed using established bioinformatics pipelines, including clustering algorithms, to determine cellular heterogeneity and quantify NRP isoform expression within distinct macrophage populations. …”

Table 2_Identification and verification of biomarkers associated with neutrophils in acute myocardial infarction: integrated analysis of bulk RNA-seq, expression quantitative trait... by Guoqing Liu (93712)

“…Hub genes were screened using the least absolute shrinkage and selection operator (LASSO) and random forest (RF) algorithms. …”

Data Sheet 2_Differential neuropilin isoform expressions highlight plasticity in macrophages in the heterogenous TME through in-silico profiling.docx by Hyun-Jee Han (20858765)

“…Datasets were processed using established bioinformatics pipelines, including clustering algorithms, to determine cellular heterogeneity and quantify NRP isoform expression within distinct macrophage populations. …”

MCCN Case Study 2 - Spatial projection via modelled data by Donald Hobern (21435904)

“…This study demonstrates: 1) Description of spatial assets using STAC, 2) Loading heterogeneous data sources into a cube, 3) Spatial projection in xarray using different algorithms offered by the <a href="https://pypi.org/project/PyKrige/" rel="nofollow" target="_blank">pykrige</a> and <a href="https://pypi.org/project/rioxarray/" rel="nofollow" target="_blank">rioxarray</a> packages.…”

Estilometría TIP: enhanced text analysis tool with customisable metrics for Spanish texts by Francisco J. Carreras-Riudavets (20562834)

“…Lexicon TIP draws on a comprehensive database of more than 320,000 lemmas and 8 million inflected forms, accounting for variations in number, gender, superlatives, diminutives, augmentatives, derogatory terms, and verb conjugations. Two key algorithms enhance this functionality: prefix detection, which accurately identifies prefixed words (e.g. …”

Bioinformatics-based screening and experimental validation of biomarkers for the treatment of connective tissue-associated interstitial lung disease with liquorice and dried ginger... by Hui Yuan (402180)

“…</p> <p>Public datasets of Peripheral blood mononuclear cells (PBMCs) from CTD-ILD (n = 4) and connective tissue disease-associated non-Inflammatory lung disease (CTD-NILD) (n = 3) patients were analyzed using differential expression (p.adj < 0.05 & |log2 Fold Change (FC)| > 0.5), protein-protein interaction networks, and cytohubba algorithms (Top5 genes from six algorithms). …”

Expanded Structural and Computational Evaluation of Mitofusin-2 Variants of Unknown Significance by Kimiya Shafaat (22416388)

“…Researchers analyzed nine variants of unknown significance across the GTPase, coiled-coil heptad-repeat, and cytosolic heptad-repeat domains, alongside three known pathogenic Arg94 mutations.</p><p dir="ltr">Using AlphaFold modeling, stability calculations, solvent accessibility, steric clash scores, and multiple pathogenicity prediction tools, the team identified structural disruptions and functional risks. …”

A paired dataset of multi-modal MRI at 3 Tesla and 7 Tesla with manual hippocampal subfield segmentations on 7T T2-weighted images by Shuyu Li (18859198)

“…Image quality is assessed using quality metrics implemented in MRIQC. </p><p dir="ltr">We expect that this dataset will further tackle the challenges of hippocampus segmentation on routine 3T MRI and serve as a valuable resource for research and development in 3T-to-7T, T1-to-T2, and functional MR image synthesis.…”

Data Sheet 1_Bioinformatics-based analysis and experimental validation of PANoptosis-related biomarkers and immune infiltration in diabetic nephropathy.zip by Su Zhang (411153)

“…Subsequently, we gained the intersecting genes of DEGs, key gene modules and PRGs. Four algorithms were further used to screen the key DE-PRGs in DN (DNDE-PRGs). …”

Table 1_Analysis and validation of necroptosis-related diagnostic biomarkers associated with immune infiltration in bronchopulmonary dysplasia.docx by Haixia Tu (15277372)

“…We identified the biological functions and pathways of DE-NRGs. RF (random forest) and LASSO (least absolute shrinkage and selection operator) algorithms were applied to identify hub genes. …”

Image 5_Analysis and validation of necroptosis-related diagnostic biomarkers associated with immune infiltration in bronchopulmonary dysplasia.jpg by Haixia Tu (15277372)

“…We identified the biological functions and pathways of DE-NRGs. RF (random forest) and LASSO (least absolute shrinkage and selection operator) algorithms were applied to identify hub genes. …”

Image 7_Analysis and validation of necroptosis-related diagnostic biomarkers associated with immune infiltration in bronchopulmonary dysplasia.jpg by Haixia Tu (15277372)

“…We identified the biological functions and pathways of DE-NRGs. RF (random forest) and LASSO (least absolute shrinkage and selection operator) algorithms were applied to identify hub genes. …”