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algorithm protein » algorithm within (Expand Search), algorithm pre (Expand Search)
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101
Flowchart of proposed fitness function algorithm.
Published 2025“…The mathematical model was transformed into a fitness function and a solution was provided with the Tabu Search Algorithm and Simulated Annealing. …”
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
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Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
112
Comparison of Molecular Recognition in Docking Versus Experimental CSD and PDB Data
Published 2025Subjects: -
113
Supplemental files to the study "Limitations of Current Machine-Learning Models in Predicting Enzymatic Functions for Uncharacterized Proteins"
Published 2025“…An open question is the ability of machine-learning approaches to predict enzymatic functions unseen in the training sets. Using a set of <i>E. coli</i> unknowns, we evaluated the current state-of-the-art machine-learning approaches and found that these methods currently lack the ability to integrate scientific reasoning into their prediction algorithms. …”
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Quantum Computing and peptide folding
Published 2024“…<p dir="ltr">The work "Peptide Folding with Quantum CVaR-VQE Algorithm" represents a significant advancement in the field of computational biology, particularly in the challenging domain of protein folding. …”
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Supplemental Tables S1 and S2 for Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks
Published 2025“…<p dir="ltr">We report on the integration of three methods that are computationally efficient enough to predict, on a proteome-wide scale, whether two proteins are likely to form a binary complex. …”
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a-c: (a) The nomogram model developed for the prognostic prediction of hub genes from the study.
Published 2025Subjects: -
117
A Genetic Algorithm Approach for Compact Wave Function Representations in Spin-Adapted Bases
Published 2025“…<i>Quantum Anamorphosis</i> addresses this challenge through physically motivated localization of molecular orbitals and site reordering, which yield unique block-diagonal Hamiltonian matrices and compact spin-adapted many-body wave functions. In this work, we introduce a genetic algorithm to identify optimal orbital/site orderings that enhance wave function compactness, thereby enabling the study of larger systems than previously possible. …”
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