2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome by Olga Botvinnik (20571431)

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A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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The results of LASSO regression algorithm. by Xue Fu (549661)

Infrared Spectroscopy Coupled with Machine Learning Algorithms to Investigate Vascular Dysfunction in Ovariectomy: An Animal Model Study by Tháfanys S. Travezani (20609398)

The GOR4 and SOPMA algorithm findings. by Ahmad Abdullah Mahdeen (19704401)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)

MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins by Martin J. Fossat (3714079)

Subjects: “…mathematically exact algorithm…”

A Chemoproteomic Approach for System-Wide and Site-Specific Uncovering of Functional Protein N‑Glycosylation by Guoli Wang (59357)

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A detailed process of iterative simulation coupled with bone density algorithm; (a) a function of stimulus and related bone density changes, and (b) iterative calculations of finit... by Hassan Mehboob (8960273)

NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

Top-ranked hub genes identified by 5 cytoHubba algorithms. by Jun Li (6494)

Left: the algorithm’s best estimate of where to put breakpoints for each number of breakpoints considered. by Zhengtian Li (5076704)

Depiction of how the label of is assigned as a function of whether are identical (row =), nested (rows ), or partially overlapping (row “else”), and as a function of the labels of... by Jordan Moutet (21800145)

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes by Vijay Subramanian (20718933)

“…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…”

Code snippets to add user-specific custom functionality in PyNoetic. by Gursimran Singh (575288)

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Modular architecture design of PyNoetic showing all its constituent functions. by Gursimran Singh (575288)

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